[phenixbb] Error of Sculptor

Zhang yu phenixzyfish at gmail.com
Wed Apr 25 09:06:08 PDT 2012


Dear Phenixer,

When I used Sculptor to generate a new model, there is a error which I
can not figure out. I input a PDB file (*.pdb) and an alignment file
(*.aln).

The following is the log file (contents in ######). There seems
something wrong with the *.aln file.
#################
Reading PDB file
----------------

File name: **/**/******/******/**.pdb
Separating solvent from macromolecules...

Reading alignment files
-----------------------

1. **/**/**.aln

#####################




The following is the content of the alignment file:

**_**      MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV
**_**      ---------MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRET
                            * **:  :*: :* * .**::*::: :: *   :     *::****..

What is the problem with the alignment file?

Thank you in advance!
Fish
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