[phenixbb] Error of Sculptor

[Gabor Bunkoczi]

Dear Fish,

can you let me know what the error message is and which Phenix version are 
you using? Your alignment file looks OK to me.

Thanks, Gabor


On Apr 25 2012, Zhang yu wrote:

>Dear Phenixer,
>
>When I used Sculptor to generate a new model, there is a error which I
>can not figure out. I input a PDB file (*.pdb) and an alignment file
>(*.aln).
>
>The following is the log file (contents in ######). There seems
>something wrong with the *.aln file.
>#################
>Reading PDB file
>----------------
>
>File name: **/**/******/******/**.pdb
>Separating solvent from macromolecules...
>
>Reading alignment files
>-----------------------
>
>1. **/**/**.aln
>
>#####################
>
>
>
>
>The following is the content of the alignment file:
>
>**_**      MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV
>**_**      ---------MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRET
>                            * **: :*: :* * .**::*::: :: * : *::****..
>
>What is the problem with the alignment file?
>
>Thank you in advance!
>Fish
>

-- 
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     Dr Gabor Bunkoczi

     Cambridge Institute for Medical Research
     Wellcome Trust/MRC Building
     Addenbrooke's Hospital
     Hills Road
     Cambridge CB2 0XY
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