Python-based
Hierarchical
ENvironment
for
Integrated
Xtallography
All tutorial videos are available on the Phenix tutorials YouTube channel: www.youtube.com/c/phenixtutorials A list of all videos is also below. Click on the link to access the video directly.
These tutorials explain how to run specific Phenix programs.
- Overview of cryo-EM tools in Phenix
- Automated map sharpening with phenix.autosharpen
- Automatic map interpretation with map_to_model
- Simulate a SAD experiment with phenix.plan_sad_experiment
- Scaling and merging anomalous data
- Checking data quality with phenix.xtriage
- Advanced Tutorial phenix.xtriage - translational NCS (tNCS)
- Advanced Tutorial phenix.xtriage - Checking for twinning
- Advanced Tutorial phenix.xtriage - Space Group Identification, Ice rings & Wilson Plot
- How to run phenix.refine
- How to run real_space_refine
- How to run Phaser-MR from the Phenix GUI
- SAD phasing using AutoSol
- Automated model building with Phenix AutoBuild
- Basic Phenix eLBOW tutorial
- How to run Structure Comparison
- Fitting ligands into density with phenix.ligandfit
- Calculating polder maps
- How to run PDB tools
- Introduction to interactive low-resolution model building with ISOLDE