Phenix Documentation - version unknown

Phenix programs and their functions
The Phenix graphical interface
Overview of video tutorials
Tutorials and Examples
Dictionary of crystallographic and other terms
FAQs: Frequently asked questions
How to install, setup and run Phenix
Complete Phenix reference documentation
Bibliography
Index

Crystallographic Structure Solution with Phenix

Data Quality Experimental phasing Molecular replacement Density Modification Model building Structure refinement Structure validation Ligands Structure Deposition
Phenix Documentation for X-ray Crystallography
Checking data quality | Experimental phasing | Molecular replacement | Model building | Structure refinement
Structure validation | Ligand fitting | Making geometry restraints | Structure deposition| All

Cryo-EM Structure Solution with Phenix

Autosharpen Dock in map Map to model Real-space structure refinement Structure validation Mtriage Structure Deposition
Phenix Documentation for Electron Microscopy (EM)
Structure refinement | Auto-sharpen a map | Dock a model into a map | Guess sequences from map | Fit a biomolecule to a map | Build a model | Making geometry restraints | Compare CA/P in two models | Identify symmetry in a map | Combine best parts of focused maps | Extract box with map and model | Convert map to structure factors | Segment a map | All

Phenix Documentation for Neutron Crystallography

Structure refinement | Structure validation | Making geometry restraints | Structure deposition| All