Hi Matteo,

I'm sorry about the problem!

I afraid there are only solution two solutions: 1) use a computer with more memory: the error below tells the program needed more memory than your computer has, or 2) wait for a one of upcoming nightly builds.

Since the release I've already made a number of changes that should help free some memory: for example, I switched from 1/4. to 1/3 gridding, which should significantly reduce the memory consumption (and speed up the calculations too).

Pavel

On 5/14/14, 1:44 AM, Matteo Colombo wrote:

Hi Pavel,
I downloaded the last released version of phenix (phenix-1.9-1692) and I would like to run the "feature enhanced map" command.

However, when I run it I got the following Memory Error that I didn't have in the previous version of phenix.

r_work: 0.1867 r_free: 0.2372
Max B subtracted from atoms and used to sharpen map: 20.0
b_sharp: 25.0
FEM loop: done so far: 10%Traceback (most recent call last):
File "/usr/local/phenix-1.9-1692/build/intel-linux-2.6/../../cctbx_project/mmtbx/command_line/development_fem.py", line 120, in <module>
    run(sys.argv[1:])
File "/usr/local/phenix-1.9-1692/build/intel-linux-2.6/../../cctbx_project/mmtbx/command_line/development_fem.py", line 99, in run
    sharp=params.sharp, signal_threshold=params.signal_threshold)
File "/usr/local/phenix-1.9-1692/cctbx_project/mmtbx/maps/fem.py", line 112, in __init__
    progress_counter = progress_counter)
File "/usr/local/phenix-1.9-1692/cctbx_project/mmtbx/maps/fem.py", line 204, in fem_loop
    weighted_average_manager    = weighted_average_manager)
File "/usr/local/phenix-1.9-1692/cctbx_project/mmtbx/maps/fem.py", line 276, in fem_loop_
    weighted_average_manager = weighted_average_manager)
File "/usr/local/phenix-1.9-1692/cctbx_project/mmtbx/maps/fem.py", line 234, in one_iteration
    m = get_map(mc=mc_wa, cg=crystal_gridding)
File "/usr/local/phenix-1.9-1692/cctbx_project/mmtbx/maps/fem.py", line 20, in get_map
    fourier_coefficients = mc)
File "/usr/local/phenix-1.9-1692/cctbx_project/cctbx/miller/__init__.py", line 4357, in __init__
    conjugate_flag=True)
MemoryError

My OS is Ubuntu precise 12.04 LTS, system 32 bit

Thanks in advance

Matteo
-- 
Matteo Colombo PhD
Groupe Extremophile et grands assemblages moléculaire
Institut de Biologie Structural J. P. Ebel
6, rue Jules Horowitz
F-38027 GRENOBLE Cedex 1
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