The agenda posted on the
workshop website (login:workshop, pswd:phenix3py) shows the complete schedule for those attending in person.
Monday, March 17 – Talks
- 09:00 – 09:05 AM Paul D. Adams, Introduction
- 09:05 – 09:30 AM Dorothee Liebschner, Current status of DiSCaMB integration/Overview of MicroED models.
- 09:30 – 09:55 AM Paulina Dominiak, Aspherical scattering factors in refinement of biomacromolecules
- 09:55 – 10:20 AM Malgorzata Biczysko, Quantum refinement with machine learning: AQuaRef
- 10:20 – 10:35 AM Break
- 10:35 – 11:00 AM Tom Terwilliger, Is there a best assignment of side-chain alternative conformations to conformers?
- 11:00 – 11:25 AM David Case, Creating and evaluating ensemble atomic models
- 11:25 – 11:45 AM Billy Poon, Phenix updates
- 11:45 - 12:10 PM Jane Richardson, Opportunities and concerns in RNA modeling
- 12:10 – 12:30 PM Christopher Schlicksup, Exploration of per-atom real space refinement weight
Tuesday, March 18 – Talks (USA Mountain Time)
- 09:00 – 09:05 AM Paul D. Adams, Welcome
- 09:05 – 09:30 AM Laura Pacoste, Developing electron diffraction methods to probe oxidation states in metalloenzymes (virtual)
- 09:30 – 09:55 AM Airlie McCoy, phasertng updates (virtual)
- 09:55 – 10:20 AM Pavel Afonine, I. Nuances, New Tools, and Methods for Visualizing and Validating Subtle Structural Details.II. Atomic Model Refinement Gets More Accurate: Combining Aspherical Density Models with Quantum-Based Restraints
- 10:20 – 10:45 AM Alisia Fadini, AlphaFold as a Prior: Guiding Protein Structure Prediction Using Experimental Data with ROCKET
- 10:45 – 11:00 AM Break
- 11:00 – 11:25 AM Oleg Sobolev, Automatically Finding the Best Reference Model
- 11:25 – 11:50 AM Nigel W. Moriarty, Paradigm Shift for Ligands in Phenix - Part Deux
- 11:50 – 12:15 PM Christopher Williams, Further details of low-pLDDT AlphaFold2 predictions
Wednesday, March 19 – Phenix Industry Session
- 9:00 AM – 12:00 PM Industry Roundtable – conference of developers and industry to discuss the future directions of Phenix. This session will be devoted to a discussion of AlphaFold/RosettaFold and future directions. Industry consortium members are encouraged to attend.
The Zoom information is below.
We look forward to having you join the meeting and discussion.
Thank you,
Ashley