September 2025 - Industry - phenix-online.org

Starting NOW - Industry Session - Sept. 30 - 2025 Fall Phenix Developers Meeting
by Ashley Dawn 30 Sep '25

30 Sep '25

*****STARTING NOW**** The Phenix Developers will host the *Industry Roundtable Discussion TODAY, Tuesday, September 30 starting promptly at 16:00* (GMT+1). This is your chance to ask questions and discuss any issues directly with the Developers. The Zoom information is below. We look forward to having you join the meeting and discussion. Thank you, Ashley ────────── Join Zoom Meeting https://lbnl.zoom.us/j/96952236198?pwd=lW66IyJdGxG9ibElTn5SmIhUwcTAw2.1 Meeting ID: 969 5223 6198 Passcode: 062039 --- One tap mobile +12133388477,,96952236198# US (Los Angeles) +16692192599,,96952236198# US (San Jose) --- Join by SIP • 96952236198(a)zoomcrc.com Join instructions https://lbnl.zoom.us/meetings/96952236198/invitations?signature=t_k5-kmgh7m… Ashley Dawn (she/her/hers) Program Manager, Phenix Industrial Consortium <https://phenix-online.org/> Molecular Biophysics & Integrated Bioimaging (MBIB <https://biosciences.lbl.gov/mbib/>) Lawrence Berkeley Laboratory 510-486-5455

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Industry Session TODAY Sept. 30 - 2025 Fall Phenix Developers Meeting
by Ashley Dawn 29 Sep '25

29 Sep '25

Dear Consortium Members, The *2025 Fall Phenix Developers Meeting * <https://phenix-online.org/workshops/sep-2025-cambridge/index.html>is this week in Cambridge, UK and online. The Phenix Developers will host an *Industry Roundtable Discussion today, Tuesday, September 30 starting promptly at 16:00* (British Summer Time/GMT+1). This is your chance to ask questions and discuss any issues directly with the Developers. The agenda posted on the workshop website <https://phenix-online.org/workshops/sep-2025-cambridge/index.html> shows the complete schedule for those attending in person. *Schedule - Tuesday September 30th* At 16:00 (British Summer Time/GMT+1) a round table conference of developers and industry users to discuss future directions of Phenix. Industry consortium members are encouraged to attend. You may add the industry session to your Google Calendar <https://calendar.google.com/calendar/event?action=TEMPLATE&tmeid=MHMxZWwycj…> The Zoom information is below. We look forward to having you join the meeting and discussion. Thank you, Ashley ────────── Join Zoom Meeting https://lbnl.zoom.us/j/96952236198?pwd=lW66IyJdGxG9ibElTn5SmIhUwcTAw2.1 Meeting ID: 969 5223 6198 Passcode: 062039 --- One tap mobile +12133388477,,96952236198# US (Los Angeles) +16692192599,,96952236198# US (San Jose) --- Join by SIP • 96952236198(a)zoomcrc.com Join instructions https://lbnl.zoom.us/meetings/96952236198/invitations?signature=t_k5-kmgh7m… Ashley Dawn (she/her/hers) Program Manager, Phenix Industrial Consortium <https://phenix-online.org/> Molecular Biophysics & Integrated Bioimaging (MBIB <https://biosciences.lbl.gov/mbib/>) Lawrence Berkeley Laboratory 510-486-5455

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Starting NOW - Developer Talks - Sept. 29 - 2025 Fall Phenix Developers Meeting
by Ashley Dawn 28 Sep '25

28 Sep '25

*****STARTING NOW**** The Phenix Developers will host a series of talks today. Please join Zoom to hear them (link below). *Monday, September 29th* *Speaker* *Time* *Topic* Paul D. Adams 9.00 Introduction Randy Read 9:00 Docking models into cryo-EM data Nigel Moriarty 9:30 Best practices for ligands 10:00 *Morning break* Dorothee Liebschner 10:30 Current status of DiSCaMB integration/Ligand Validation Lukasz Golon 11:00 Fast Quantum Crystallography: Satisfying DiSCaMB's Need for Speed. Vincent Chen 11:30 The Future of MolProbity 12:00 *Lunch* Benjamin Eltzner 13:00 RNAprecis: Using shapes on multiple scales for structure correction Airlie McCoy 13:30 The next generation of Phaser tools Malgorzata Biczysko 14:00 Towards QM electron density in Q|R 14:30 *Afternoon break* Pavel Afonine 15:00 Local Resolution in CryoEM. Modeling keto-enol tautomerization in Phenix Tom Terwilliger 15:30 AI tools for Phenix users and developers Billy Poon 16:00 Phenix updates 17:00 *Finish* * <https://calendar.google.com/calendar/event?action=TEMPLATE&tmeid=MHMxZWwycj…>Join Zoom Meeting:* https://lbnl.zoom.us/j/96952236198?pwd=lW66IyJdGxG9ibElTn5SmIhUwcTAw2.1 Meeting ID: 969 5223 6198 Passcode: 062039 --- One tap mobile +12133388477,,96952236198# US (Los Angeles) +16692192599,,96952236198# US (San Jose) --- Join by SIP • 96952236198(a)zoomcrc.com Join instructions https://lbnl.zoom.us/meetings/96952236198/invitations?signature=t_k5-kmgh7m… Ashley Dawn (she/her/hers) Program Manager, Phenix Industrial Consortium <https://phenix-online.org/> Molecular Biophysics & Integrated Bioimaging (MBIB <https://biosciences.lbl.gov/mbib/>) Lawrence Berkeley Laboratory 510-486-5455 <https://calendar.google.com/calendar/event?action=TEMPLATE&tmeid=MHMxZWwycj…>

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Talks TOMORROW Sept. 29 - 2025 Fall Phenix Developers Meeting - Developer Talks and Industry Session
by Ashley Dawn 28 Sep '25

28 Sep '25

Dear Consortium Members, The *2025 Fall Phenix Developers Meeting * <https://phenix-online.org/workshops/sep-2025-cambridge/index.html>is this week in Cambridge, UK and online. The Phenix Developers will host a series of talks tomorrow, Monday, Sept 29, and they will host an Industry Roundtable Discussion on Tuesday, September 30 starting promptly at 16:00 (British Summer Time/GMT+1). This is your chance to ask questions and discuss any issues directly with the Developers. The agenda posted on the workshop website <https://phenix-online.org/workshops/sep-2025-cambridge/index.html> shows the complete schedule for those attending in person. Here's the finalized schedule of talks: *Schedule - Monday, September 29th* *Speaker* *Time* *Topic* Paul D. Adams 9.00 Introduction Randy Read 9:00 Docking models into cryo-EM data Nigel Moriarty 9:30 Best practices for ligands 10:00 *Morning break* Dorothee Liebschner 10:30 Current status of DiSCaMB integration/Ligand Validation Lukasz Golon 11:00 Fast Quantum Crystallography: Satisfying DiSCaMB's Need for Speed. Vincent Chen 11:30 The Future of MolProbity 12:00 *Lunch* Benjamin Eltzner 13:00 RNAprecis: Using shapes on multiple scales for structure correction Airlie McCoy 13:30 The next generation of Phaser tools Malgorzata Biczysko 14:00 Towards QM electron density in Q|R 14:30 *Afternoon break* Pavel Afonine 15:00 Local Resolution in CryoEM. Modeling keto-enol tautomerization in Phenix Tom Terwilliger 15:30 AI tools for Phenix users and developers Billy Poon 16:00 Phenix updates 17:00 *Finish* You may add the talks to your Google Calendar <https://calendar.google.com/calendar/event?action=TEMPLATE&tmeid=MHMxZWwycj…> *Schedule - Tuesday September 30th* At 16:00 (British Summer Time/GMT+1) a round table conference of developers and industry users to discuss future directions of Phenix. Industry consortium members are encouraged to attend. You may add the industry session to your Google Calendar <https://calendar.google.com/calendar/event?action=TEMPLATE&tmeid=MHMxZWwycj…> The Zoom information is below. We look forward to having you join the meeting and discussion. Thank you, Ashley ────────── Join Zoom Meeting https://lbnl.zoom.us/j/96952236198?pwd=lW66IyJdGxG9ibElTn5SmIhUwcTAw2.1 Meeting ID: 969 5223 6198 Passcode: 062039 --- One tap mobile +12133388477,,96952236198# US (Los Angeles) +16692192599,,96952236198# US (San Jose) --- Join by SIP • 96952236198(a)zoomcrc.com Join instructions https://lbnl.zoom.us/meetings/96952236198/invitations?signature=t_k5-kmgh7m… Ashley Dawn (she/her/hers) Program Manager, Phenix Industrial Consortium <https://phenix-online.org/> Molecular Biophysics & Integrated Bioimaging (MBIB <https://biosciences.lbl.gov/mbib/>) Lawrence Berkeley Laboratory 510-486-5455

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Starts Monday - 2025 Fall Phenix Developers Meeting - Developer Talks and Industry Session
by Ashley Dawn 24 Sep '25

24 Sep '25

Dear Consortium Members, The *2025 Fall Phenix Developers Meeting * <https://phenix-online.org/workshops/sep-2025-cambridge/index.html>is next week *September 29-30, 2025 *in Cambridge, UK and online. The Phenix Developers will host a series of talks on Monday, and they will host an *Industry Roundtable Discussion on Tuesday, September 30 starting promptly at 16:00* (British Summer Time/GMT+1). This is your chance to ask questions and discuss any issues directly with the Developers. The agenda posted on the workshop website <https://phenix-online.org/workshops/sep-2025-cambridge/index.html> shows the complete schedule for those attending in person. Here's the finalized schedule of talks: *Monday 29th September* *Speaker* *Time* *Topic* Paul D. Adams 9.00 Introduction Randy Read 9:00 Docking models into cryo-EM data Nigel Moriarty 9:30 Best practices for ligands 10:00 *Morning break* Dorothee Liebschner 10:30 Current status of DiSCaMB integration/Ligand Validation Lukasz Golon 11:00 Fast Quantum Crystallography: Satisfying DiSCaMB's Need for Speed. Vincent Chen 11:30 The Future of MolProbity 12:00 *Lunch* Benjamin Eltzner 13:00 RNAprecis: Using shapes on multiple scales for structure correction Airlie McCoy 13:30 The next generation of Phaser tools Malgorzata Biczysko 14:00 Towards QM electron density in Q|R 14:30 *Afternoon break* Pavel Afonine 15:00 Local Resolution in CryoEM. Modeling keto-enol tautomerization in Phenix Tom Terwilliger 15:30 AI tools for Phenix users and developers Billy Poon 16:00 Phenix updates 17:00 *Finish* You may add the talks to your Google Calendar <https://calendar.google.com/calendar/event?action=TEMPLATE&tmeid=MHMxZWwycj…> *Tuesday September 30th* 16:00 (British Summer Time/GMT+1) round table conference of developers and industry users to discuss future directions of Phenix. Industry consortium members are encouraged to attend. You may add the industry session to your Google Calendar <https://calendar.google.com/calendar/event?action=TEMPLATE&tmeid=MHMxZWwycj…> The Zoom information is below. We look forward to having you join the meeting and discussion. Thank you, Ashley ────────── Join Zoom Meeting https://lbnl.zoom.us/j/96952236198?pwd=lW66IyJdGxG9ibElTn5SmIhUwcTAw2.1 Meeting ID: 969 5223 6198 Passcode: 062039 --- One tap mobile +12133388477,,96952236198# US (Los Angeles) +16692192599,,96952236198# US (San Jose) --- Join by SIP • 96952236198(a)zoomcrc.com Join instructions https://lbnl.zoom.us/meetings/96952236198/invitations?signature=t_k5-kmgh7m… Ashley Dawn (she/her/hers) Program Manager, Phenix Industrial Consortium <https://phenix-online.org/> Molecular Biophysics & Integrated Bioimaging (MBIB <https://biosciences.lbl.gov/mbib/>) Lawrence Berkeley Laboratory 510-486-5455

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