|Python-based Hierarchical ENvironment for Integrated Xtallography|
Where can I find sample data?
Can I easily run a Wizard with some sample data?
phenix.run_example p9-sadThis command copies the $PHENIX/examples/p9-sad directory to your working directory and executes the commands in the file run.sh.
What sample data are available to run automatically?
phenix.run_example --helpThis command lists all the directories in $PHENIX/examples/ that have a command file run.sh ready to use. For example:
phenix.run_example --help PHENIX run_example script. Fri Jul 6 12:07:08 MDT 2007 Use: phenix.run_example example_name [--all] [--overwrite] Data will be copied from PHENIX examples into subdirectories of this working directory If --all is set then all examples will be run (takes a long time!) If --overwrite is set then the script will overwrite subdirectories List of available examples: 1J4R-ligand a2u-globulin-mr gene-5-mad p9-build p9-sad
Are any of the sample datasets annotated?
The PHENIX tutorials listed on the main PHENIX web page will walk you through sample datasets, telling you what to look for in the output files. For example, the Tutorial 1: Solving a structure using SAD data tutorial uses the p9-sad dataset as example. It tells you how to run this example data in AutoSol and how to interpret the results.