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<p>Hi Tom,</p>
<p>thank so much you for your answer. I uploaded the nigthtly build and it worked far better (a couple of hours) and ended correctly.</p>
<p>I noticed that the gain was due to the fact the only about 2400 boxes were calculated (in place of more than 40000 in my slow previous calculation, likely explaining the gain of a factor 20). As i have a very large map, i wonder how this affects the quality
of the LocalResolutionMap. And i also wonder if there is a mean to define this parameter to study this effect.</p>
<p>Thank you so much for your help.</p>
<p>Best regards.</p>
<p>Philippe.</p>
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<span style="font-size: 9pt; font-family: Courier;">Philippe Cuniasse, PhD/HDR.</span><span style="font-size: 13.5pt;"><o:p></o:p></span></p>
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<span style="font-size: 9pt; font-family: Courier;">Institut de Biologie Integrative de la cellule.</span><span style="font-size: 13.5pt;"><o:p></o:p></span></p>
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<span lang="EN-GB" style="font-size: 9pt; font-family: Courier;">Tel: (33) 1 69 08 56 35</span><span style="font-size: 10.5pt;"><o:p></o:p></span></p>
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<span style="font-size: 9pt; font-family: Courier;">Fax: (33) 1 69 08 47 12</span><span style="font-size: 10.5pt;"><o:p></o:p></span></p>
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<span style="font-size: 9pt; font-family: Courier;">Email: </span><span style="font-size: 9pt; font-family: Courier; color: rgb(0, 0, 254);"><a href="mailto:philippe.cuniasse@cea.fr" contenteditable="false" title="mailto:philippe.cuniasse@cea.fr" style="color: rgb(5, 99, 193);"><span style="color: purple;">philippe.cuniasse@cea.fr</span></a></span><span style="font-size: 10.5pt;"><o:p></o:p></span></p>
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<span style="font-size: 9pt; font-family: Courier;">Web:</span><span style="font-size: 9pt; font-family: Courier; color: rgb(0, 0, 245);"> <a href="http://biodev.cea.fr/rasmot3d/" contenteditable="false" title="http://biodev.cea.fr/rasmot3d/" style="color: rgb(5, 99, 193);"><span style="color: purple;">http://biodev.cea.fr/rasmot3d/</span></a></span><span style="font-size: 10.5pt;"><o:p></o:p></span></p>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>De :</b> Tom Terwilliger <tterwilliger@newmexicoconsortium.org><br>
<b>Envoyé :</b> vendredi 27 octobre 2023 11:04:52<br>
<b>À :</b> CUNIASSE Philippe<br>
<b>Cc :</b> phenixbb@phenix-online.org; Tom Terwilliger<br>
<b>Objet :</b> Re: [phenixbb] Pb LocalResolutionMap calculation</font>
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<div dir="ltr">Hi Philippe,
<div><br>
<div>I'm sorry for the slow calculation...the problem is the number of boxes is too high. If you download a nightly build like this one:</div>
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<div><a href="https://phenix-online.org/download/phenix/nightly/?version=1.21rc1-5130">https://phenix-online.org/download/phenix/nightly/?version=1.21rc1-5130</a><br>
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<div>then it should be a lot faster (still not quick, but in your case should be 20x faster).</div>
<div>All the best,</div>
<div>Tom T</div>
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<div dir="ltr" class="gmail_attr">On Fri, Oct 27, 2023 at 2:16 AM CUNIASSE Philippe <<a href="mailto:Philippe.CUNIASSE@cea.fr">Philippe.CUNIASSE@cea.fr</a>> wrote:<br>
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<p>Dear all,</p>
<p><br>
</p>
<p>i try to calculate local resolution maps with phenix <span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px">since a couple
of days</span>. It turns out that the calculation seems very slow and i suspect that there is a problem because i even cannot stop the calculation with the abort button in the gui. In my last run (still running), i use 2 half-maps and the program can read
them correctly, start the calculation by returning that <span style="font-size:12pt">42875 </span><span style="font-size:12pt">boxes are considered. I run it on my MacBook pro (M1 running OSX 13.4 with 32Gb RAM) on 4 cpu. The calculation actually runs on
4 CPUs. However, with this calculation (and also a smaller map with about 17000 boxes on 1CPU), the calculations run more than 24 hours without finishing. I wonder if there coud be a problem and if no, what could be the duration of such calculation. </span></p>
<p><span style="font-size:12pt">Thanks in advance for your help.</span></p>
<p><span style="font-size:12pt">Best regards.</span></p>
<p><span style="font-size:12pt">Philippe Cuniasse.</span></p>
<p></p>
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<p class="MsoNormal" style="margin:0cm;font-size:11pt;font-family:Calibri,sans-serif">
<span lang="EN-US" style="font-family:Courier">Philippe Cuniasse, PhD/HDR.<u></u><u></u></span></p>
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<span lang="EN-US" style="font-family:Courier;color:rgb(51,51,51)">Institute for Integrative Biology of the Cell (I2BC)</span><span lang="EN-US" style="font-family:Courier"><u></u><u></u></span></p>
<p class="MsoNormal" style="margin:0cm;font-size:11pt;font-family:Calibri,sans-serif">
<span style="font-family:Courier">UMR 9198 CNRS-CEA-Univ Paris Sud<u></u><u></u></span></p>
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<span style="font-family:Courier">Bat 144 CE-Saclay<u></u><u></u></span></p>
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<span style="font-family:Courier">91191 Gif-sur-Yvette Cedex, France<u></u><u></u></span></p>
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<span style="font-family:Courier"> </span></p>
<p class="MsoNormal" style="margin:0cm;font-size:11pt;font-family:Calibri,sans-serif">
<span lang="EN-US" style="font-family:Courier">Tel: (33) 1 69 08 56 35<u></u><u></u></span></p>
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<span lang="EN-US" style="font-family:Courier">Fax: (33) 1 69 08 47 12<u></u><u></u></span></p>
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<span lang="EN-US" style="font-family:Courier">Email: </span><span style="font-family:Courier;color:rgb(0,0,254)"><a href="mailto:philippe.cuniasse@cea.fr" target="_blank"><span lang="EN-US" style="color:purple">philippe.cuniasse@cea.fr</span></a></span><span lang="EN-US" style="font-family:Courier"><u></u><u></u></span></p>
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<span lang="EN-US" style="font-family:Courier">Web:</span><span lang="EN-US" style="font-family:Courier;color:rgb(0,0,245)"> </span><span style="font-family:Courier;color:rgb(0,0,245)"><a href="http://biodev.cea.fr/rasmot3d/" target="_blank"><span lang="EN-US" style="color:purple">http://biodev.cea.fr/rasmot3d/</span></a></span><span lang="EN-US" style="font-family:Courier;color:rgb(0,0,245)"><u></u><u></u></span></p>
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<span lang="EN-US" style="font-family:Courier;color:rgb(0,0,245)">Web: <a href="https://www.i2bc.paris-saclay.fr" target="_blank">
<span style="color:rgb(5,99,193)">https://www.i2bc.paris-saclay.fr</span></a><u></u><u></u></span></p>
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<span class="gmail_signature_prefix">-- </span><br>
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<div dir="ltr">Thomas C Terwilliger
<div>Laboratory Fellow, Los Alamos National Laboratory</div>
<div>Senior Scientist, New Mexico Consortium</div>
<div>100 Entrada Dr, Los Alamos, NM 87544</div>
<div>Email: <a href="mailto:tterwilliger@newmexicoconsortium.org" target="_blank">
tterwilliger@newmexicoconsortium.org</a></div>
<div>Tel: 505-431-0010</div>
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