<div dir="ltr">Hi Sangeeta,<div><br><div>I'm sorry for the problem with phenix.auto_sharpen! Can you possibly try these things that may help figure out the problem:</div><div><br></div><div>From the command line, type this:</div><div><br></div><div> phenix.version</div><div><br></div><div>This should tell you your version of phenix, and it will also show that phenix is present in this terminal window.</div><div>Now type:</div><div><br></div><div> phenix_regression.list auto_sharpen<br></div><div><br></div><div>This will then list a command that you can run on your computer to test auto_sharpen. On mine it looks like:</div><div><br></div><div>libtbx.python "/net/anaconda/raid1/terwill/misc/PHENIX/modules/phenix_regression/segment_and_split_map/tst_auto_sharpen.py"<br></div><div><br></div><div>Copy and paste whatever is printed there and make sure that it runs and ends with "OK". In particular, one of the tests will be:</div><div><br></div><div> "Testing auto_sharpen with model and remove_aniso"<br></div><div><br></div><div>This will be testing your problem case.</div><div><br></div><div>Let me know (off-list) if this test fails and I will try to help you debug the problem.</div><div><br></div><div>All the best,</div><div>Tom T</div></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Wed, Aug 19, 2020 at 1:28 AM sangeeta niranjan <<a href="mailto:sangeeta.19apr@gmail.com">sangeeta.19apr@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div>Hello,</div><div>I am trying to use Auto Sharpen feature of a CyoEM refined map into Phenix but the job is getting failed every time with the following error:<br></div><div>Missing the model file:</div><div>followed with model file name and location.</div><div><br></div><div>Although it was working before but now it's showing the same error for all the auto sharpen runs including Models/PDBs.</div><div><br></div><div><br></div><div>Thank you<br></div><div>-- <br><div dir="ltr"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr">Sangeeta Niranjan<div>Ph.D. Student, Lab of structural Biology<br><div>Lab-6 NB</div><div>National Centre for cell Science</div><div>Ganeshkhind, Pune, India</div><div><br></div></div></div></div></div></div></div></div></div></div>
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Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org" target="_blank">phenixbb-leave@phenix-online.org</a></blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr">Thomas C Terwilliger<div>Laboratory Fellow, Los Alamos National Laboratory</div><div>Senior Scientist, New Mexico Consortium</div><div>100 Entrada Dr, Los Alamos, NM 87544</div><div>Email: <a href="mailto:tterwilliger@newmexicoconsortium.org" target="_blank">tterwilliger@newmexicoconsortium.org</a></div><div>Tel: 505-431-0010</div><div><br></div></div></div></div></div></div></div></div></div></div>