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--></style></head><body lang=EN-US link=blue vlink="#954F72"><div class=WordSection1><p class=MsoNormal>Hello all,</p><p class=MsoNormal>Thanks for your reply. I checked the content in the bootstrap.py. It seems that there is no anonymous method for phenix and xfel and cciuser option is only for developers. It seems that the only way is enter the password and download the source and compile from the downloaded source. </p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Cheers,</p><p class=MsoNormal>Taimin<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>From Windows 10 Email Application</p><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'><o:p> </o:p></span></p><div style='mso-element:para-border-div;border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0in 0in 0in'><p class=MsoNormal style='border:none;padding:0in'><b>From: </b><a href="mailto:bkpoon@lbl.gov">Billy Poon</a><br><b>Sent: </b>Wednesday, November 16, 2016 10:02 PM<br><b>To: </b><a href="mailto:rdo20@cam.ac.uk">R. D. Oeffner</a><br><b>Cc: </b><a href="mailto:taiminyang@gmail.com">Taimin Yang</a>; <a href="mailto:phenixbb@phenix-online.org">PHENIX user mailing list</a><br><b>Subject: </b>Re: [phenixbb] Why can't I use bootstrap.py in cctbx to compilephenix?</p></div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'><o:p> </o:p></span></p><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>Hi Taimin,</span><span style='font-size:12.0pt;font-family:"Times New Roman",serif'><o:p></o:p></span></p><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>Also, you need to accept the licensing terms for Phenix before you can download it (<a href="http://www.phenix-online.org/phenix_request/index.cgi">http://www.phenix-online.org/phenix_request/index.cgi</a>). You have to use the email address from your academic institution.<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>You will then get a password which will allow you to download Phenix. We have precompiled packages or you can download the source and compile Phenix yourself.<o:p></o:p></span></p></div></div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'><br clear=all><o:p></o:p></span></p><div><div><div><div><div><div><div><div><div><div><div><div><div><div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>--<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:9.5pt;font-family:"Times New Roman",serif'>Billy K. Poon</span><span style='font-size:12.0pt;font-family:"Times New Roman",serif'><o:p></o:p></span></p></div></div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>Research Scientist, Molecular Biophysics and Integrated Bioimaging<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>Lawrence Berkeley National Laboratory<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>1 Cyclotron Road, M/S 33R0345<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>Berkeley, CA 94720<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>Tel: (510) 486-5709<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>Fax: (510) 486-5909<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a><o:p></o:p></span></p></div></div></div></div></div></div></div></div></div></div></div></div></div></div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'><o:p> </o:p></span></p><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>On Wed, Nov 16, 2016 at 12:39 PM, R. D. Oeffner <<a href="mailto:rdo20@cam.ac.uk" target="_blank">rdo20@cam.ac.uk</a>> wrote:<o:p></o:p></span></p><blockquote style='border:none;border-left:solid #CCCCCC 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-right:0in'><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>I don't think building Phenix with bootstrap is yet possible using only anonymous access to all the necessary repositories. Many repositories require authentication. However, it is possible to rebuild the Phenix C++ libraries in an existing Phenix installation.<br><br>Regards,<br><br>Rob<br><br>-- <br>Robert Oeffner, Ph.D.<br>Research Associate, The Read Group<br>Department of Haematology,<br>Cambridge Institute for Medical Research<br>University of Cambridge<br>Cambridge Biomedical Campus<br>Wellcome Trust/MRC Building<br>Hills Road<br>Cambridge CB2 0XY<br><br><a href="http://www.cimr.cam.ac.uk/investigators/read/index.html" target="_blank">www.cimr.cam.ac.uk/investigators/read/index.html</a><br>tel: <a href="tel:%2B44%280%291223%20763234" target="_blank">+44(0)1223 763234</a><br>mobile: <a href="tel:%2B44%280%297712%20887162" target="_blank">+44(0)7712 887162</a><br>-----Original Message----- From: Taimin Yang<br>Sent: Wednesday, November 16, 2016 8:20 PM<br>To: <a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br>Subject: [phenixbb] Why can't I use bootstrap.py in cctbx to compile phenix?<o:p></o:p></span></p><div><div><p class=MsoNormal style='margin-bottom:12.0pt'><span style='font-size:12.0pt;font-family:"Times New Roman",serif'><br><br><br><br>Dear Professor,<br><br><br>My name is Taimin Yang and I am a PhD student in Stockholm University. I try to compile my own phenix using bootstrap.py but here is the error information:<br><br><br>root@Linux-main:/usr/local/crystallography_software/phenix# python bootstrap.py --builder=phenix --with-python=/usr/local/anaconda2/bin/python hot update build<br>Performing actions: hot update build<br>Traceback (most recent call last):<br> File "bootstrap.py", line 2034, in <module><br> run()<br> File "bootstrap.py", line 2029, in run<br> enable_shared=options.enable_shared,<br> File "bootstrap.py", line 926, in __init__<br> map(self.add_module, self.get_codebases())<br> File "bootstrap.py", line 1051, in add_module<br> action = MODULES.get_module(module)().get_url(auth=self.get_auth())<br> File "bootstrap.py", line 553, in get_url<br> raise Exception('No anonymous access method defined for module: %s. Try with --%s'%(self.module, e.args[0]))<br>Exception: No anonymous access method defined for module: chem_data. Try with --cciuser<br><br>What should I do to compile my own phenix?<br>Thank you very much.<br><br>Best regards,<br>Taimin<br><br><br><br><br><br><o:p></o:p></span></p></div></div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'>_______________________________________________<br>phenixbb mailing list<br><a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br><a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org" target="_blank">phenixbb-leave@phenix-online.org</a> <br>_______________________________________________<br>phenixbb mailing list<br><a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br><a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org" target="_blank">phenixbb-leave@phenix-online.org</a><o:p></o:p></span></p></blockquote></div></div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman",serif'><o:p> </o:p></span></p><p class=MsoNormal><o:p> </o:p></p></div></body></html>