<div dir="ltr">On Wed, Nov 26, 2014 at 8:18 AM, Andreas Förster <span dir="ltr"><<a href="mailto:docandreas@gmail.com" target="_blank">docandreas@gmail.com</a>></span> wrote:<br><div class="gmail_extra"><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">I'm trying to get phenix.rosetta_refine to run. I think it's all set up properly, with Rosetta 3.5 and Phenix 1810 on RHEL 6.3 64bit.<br></blockquote><div><br></div><div>First bit of advice: don't use Rosetta 3.5, Frank has fixed a bunch of bugs since then. You'll need one of the recent weekly releases.</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
However<br>
<br>
phenix.rosetta_refine model.pdb data.mtz nproc=48 protocol=full > log&<br>
<br>
fails with the following error in log:<br>
<br>
End of input processing<br>
Sorry: The RosettaScripts executable could not be located. Please add the appropriate directory to your PATH environment variable, or set the variable ROSETTA_BIN to point to it.<br></blockquote><div><br></div><div>This was a poorly written error message - that environment variable doesn't actually have the desired effect here. (It's fixed in the current code but we're overdue for a new nightly build.) The correct approach is to set the variable PHENIX_ROSETTA_PATH, which will point to the top level of the Rosetta distribution - in their newer directory layout this will have a sub-directory named "main", so if you don't see that, you're in the wrong place.</div><div><br></div><div>-Nat</div></div></div></div>