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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Dear Phenix Users,<br>
<br>
I am trying to compile rosetta mr on my fedora 10 computer:<br>
http://www.phenix-online.org/documentation/mr_rosetta.htm#anch35<br>
<br>
Compared to the instructions <br>
% tar xzf rosetta3.2_Bundles.tgz<br>
<br>
did not work for me, instead I run<br>
% tar xvf rosetta3.2_Bundles.tgz<br>
<br>
and subsequently <br>
% tar xvf BioTools-3.3.tgz<br>
% tar xvf protocol_capture-3.3.tgz <br>
etc etc<br>
<br>
>From the rosetta_source directory as an ordinary user (not root) I run:<br>
% python scons.py -j2 bin mode=release<br>
<br>
The compilation runs for a while but finally I got the termination message below.<br>
<br>
What should I try next?<br>
<br>
Best regards,<br>
Martin<br>
<br>
#################### my computer info ##################<br>
<br>
daffy-mochma 183% scons --version<br>
SCons by Steven Knight et al.:<br>
script: v1.0.0.d20080826.r3315, 2008/08/26 11:30:08, by scons on scons-dev<br>
engine: v1.0.0.d20080826.r3315, 2008/08/26 11:30:08, by scons on scons-dev<br>
Copyright (c) 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008 The SCons Foundation<br>
<br>
daffy-mochma 104% uname -a<br>
Linux daffy 2.6.27.41-170.2.117.fc10.i686 #1 SMP Thu Dec 10 11:00:29 EST 2009 i686 i686 i386 GNU/Linux<br>
<br>
daffy-mochma 105% python --version<br>
Python 2.5.2<br>
<br>
<br>
<br>
############# termination message #############################<br>
<br>
g++ -o build/src/release/linux/2.6/32/x86/gcc/libutility.so -Wl,-rpath=/net/fileserver/xtal/rosetta3.3_bundles/rosetta_source/build/external/release/linux/2.6/32/x86/gcc/ -shared build/src/release/linux/2.6/32/x86/gcc/utility/pointer/ReferenceCount.os build/src/release/linux/2.6/32/x86/gcc/utility/pointer/ReferenceCountMI_.os
build/src/release/linux/2.6/32/x86/gcc/utility/options/OptionCollection.os build/src/release/linux/2.6/32/x86/gcc/utility/options/mpi_stderr.os build/src/release/linux/2.6/32/x86/gcc/utility/tag/Tag.os build/src/release/linux/2.6/32/x86/gcc/utility/sql_database/DatabaseSessionManager.os
build/src/release/linux/2.6/32/x86/gcc/utility/boinc/boinc_util.os build/src/release/linux/2.6/32/x86/gcc/utility/io/icstream.os build/src/release/linux/2.6/32/x86/gcc/utility/io/izstream.os build/src/release/linux/2.6/32/x86/gcc/utility/io/ocstream.os build/src/release/linux/2.6/32/x86/gcc/utility/io/ozstream.os
build/src/release/linux/2.6/32/x86/gcc/utility/options/keys/OptionKeys.os build/src/release/linux/2.6/32/x86/gcc/utility/excn/Exceptions.os build/src/release/linux/2.6/32/x86/gcc/utility/file/file_sys_util.os build/src/release/linux/2.6/32/x86/gcc/utility/file/FileName.os
build/src/release/linux/2.6/32/x86/gcc/utility/file/gzip_util.os build/src/release/linux/2.6/32/x86/gcc/utility/file/PathName.os build/src/release/linux/2.6/32/x86/gcc/utility/basic_sys_util.os build/src/release/linux/2.6/32/x86/gcc/utility/string_util.os
build/src/release/linux/2.6/32/x86/gcc/utility/heap.os build/src/release/linux/2.6/32/x86/gcc/utility/integer_mapping.os build/src/release/linux/2.6/32/x86/gcc/utility/mpi_util.os build/src/release/linux/2.6/32/x86/gcc/utility/exit.os build/src/release/linux/2.6/32/x86/gcc/utility/LexicographicalIterator.os
-Llib -Lexternal/lib -Lbuild/src/release/linux/2.6/32/x86/gcc -Lsrc -Lbuild/external/release/linux/2.6/32/x86/gcc -Lexternal -L/usr/local/lib -L/usr/lib -lObjexxFCL -lz -lcppdb -lsqlite3<br>
/usr/bin/ld: cannot find -lz<br>
collect2: ld returned 1 exit status<br>
scons: *** [build/src/release/linux/2.6/32/x86/gcc/libutility.so] Error 1<br>
scons: building terminated because of errors.<br>
<br>
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<div class="PlainText">Martin Moche, Ph.D.<br>
Head of Protein Crystallography<br>
Karolinska Institutet<br>
MBB/PSF<br>
Scheeles v�g 2<br>
171 77 Stockholm<br>
Sweden<br>
phone: +46-8-524 868 43<br>
mobile: +46-73-322 93 27<br>
fax: +46-8-524 868 68<br>
email: Martin.Moche@ki.se<br>
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