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ANY phenix.refine run, from GUI or from a command line, ALWAYS
generates an anomalous difference map, if an input data file contains
Fobs(+) and Fobs(-). Please look into output MTZ file with map
coefficients for such map. <br>
<br>
Pavel.<br>
<br>
<br>
On 11/22/09 5:43 PM, Nathaniel Echols wrote:
<blockquote cite="mid:5061A03C-2091-4031-9DAA-BBE761D1EC55@lbl.gov"
type="cite">
<pre wrap="">On Nov 22, 2009, at 4:00 PM, Maia Cherney wrote:
</pre>
<blockquote type="cite">
<pre wrap="">I want to verify some sulfur atoms in my ligands. I would like to use
sulfur anomalous dispersion. I know the protein structure. What is the
best way to generate an anomalous difference map? Is there a
"phenix.find_anomalous_scatterers_from_model" or similar command in phenix?
</pre>
</blockquote>
<pre wrap=""><!---->
You can generate the anomalous difference map using either of the same commands in my last message - the only difference is that the map type is simply "anomalous".
--------------------
Nathaniel Echols
Lawrence Berkeley Lab
510-486-5136
<a class="moz-txt-link-abbreviated" href="mailto:NEchols@lbl.gov">NEchols@lbl.gov</a>
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</pre>
</blockquote>
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