[phenixbb] MR-Rosetta crashes during rebuild
Andrea Piserchio
andrea.piserchio at gmail.com
Thu Jul 1 12:34:30 PDT 2021
Dear all,
I am trying to run MR-Rosetta using the gui;
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
Phenix version 1.19.2-4158
running on Ubuntu 20.04.2 LTS (20.04, focal)
rosetta.run_tests seems to run without errors.
As inputs, I use a HHpred file, a reflection file, a sequence (FASTA) file
and I tried also providing directly the fragments files from the Robetta
server.
After generating some starting models, the runs keep crashing during the
rebuild stage giving the error messages below.
Is there a way to troubleshoot this? It does generate some initial models,
so it seems to correctly read the HHPred file and the fasta file.
Thank you in advance,
Andrea
non-zero return code: 139
Failed to run REBUILD
from rebuild.log
AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log
FOR DETAILS.
Segmentation fault (core dumped)
from ROSETTA_CRASH.log:
[END_BACKTRACE]
[FILE]: SIGSEGV
[LINE]: 11
[START_MESSAGE]
Segmentation Fault
[END_MESSAGE]
[END_CRASH_REPORT]
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