[phenixbb] unable to run coot

[Dorothee Liebschner]

Hi,

Did you set the path to Coot in the Phenix preferences?

Also, check some info here:
https://www.phenix-online.org/documentation/coot.html

Dorothee

On Thu, Feb 11, 2021 at 3:40 PM Badmalia, Maulik <maulik.badmalia at uleth.ca>
wrote:

> hello team phenix,
>
> I hope this email finds you well.
>
> I recently downloaded phenix for analysing our cryoEM data, before moving
> to the data analysis I decided to try the tutorial. I decided to use the
> autosharpen option first, I was able to access the tutorial but when I
> clicked on coot I repeatedly got a message saying that "Sorry: the 'coot'
> command could not be located.
>
> We have installed Coot to run on a CentOS platform and has the latest
> version of Coot on the system. I am a novice with linux and phenix. So any
> help in this regard would be highly appreciated. Do let me know if you have
> any questions.
>
> Regards,
> Maulik
>
> *Maulik D. Badmalia*
>
> *Postdoctoral Researcher*
>
> *Laboratory of Medicinal Biophysics*
>
> *Alberta RNA Research and Training Institute*
>
> *Dept. of Chemistry & Biochemistry*
>
> *University of Lethbridge, Lethbridge, AB, Canada*
>
>
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-- 
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
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