[phenixbb] phenix.polder how to select atoms by _struct_asym.id

[Pavel Afonine]

Hi Agnieszka,

currently the only way to make atom selections is to use Phenix atom 
selection syntax. To learn about atom selection syntax please refer to 
the following resources:

http://phenix-online.org/documentation/reference/atom_selections.html#examples-for-selection-expressions

Pavel


On 2/10/21 05:18, Agnieszka Kiliszek wrote:
> Hi everyone,
>
> I would like to generate polder maps in phenix of selected ligand 
> molecules using mmCIF files. For me, the most convenient way of 
> selecting atoms of ligand was to use  "_struct_asym.id". Therefore I 
> tried syntax selection segid but I received error "no atoms selected". 
> In pymol similar syntax "segi" works for the same mmCIF file.
>
> What can be the reason of the error? Is it a way to select atoms of 
> ligand using "_struct_asym.id" in phenix.polder?
>
> Best regards,
>
> Agnieszka
>
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
> Unsubscribe: phenixbb-leave at phenix-online.org