[phenixbb] Molprobity and D-amino acids

Prasun Kumar prasun.kumar at bristol.ac.uk
Mon Aug 9 01:45:53 PDT 2021


Hi All

I am trying to solve a structure with D-amino acids. After refinement when I check the Molprobity results, I find a lot of C-beta outliers (a snapshot is appended below). I also get clashes between the carbonyl group of one residue and the side chain of the other. Any suggestion would be really helpful.

C-beta outlier
[cid:df63696e-1ce2-496d-9c9d-f4d35bd16015]

Clashes
[cid:9f665070-525b-497c-8009-e55ba533fdc1]

Cheers
PK
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