[phenixbb] map_to_model input labels

Tom Terwilliger tterwilliger at newmexicoconsortium.org
Fri Nov 20 10:00:00 PST 2020

Hi Nick,
I'm sorry, although map_to_model should run with mtz files, it is set up to
only read maps. So you would have to run an FFT to convert your mtz to a
map first (map_to_model is really focused on cryo-em maps). Also note that
it would be best to cut out a box from that map around the region that you
want to build and supply that to map_to_model.
All the best,
Tom T

On Fri, Nov 20, 2020 at 10:42 AM Schnicker, Nicholas J <
nicholas-schnicker at uiowa.edu> wrote:

> Hi All,
> I'm trying to run map_to_model via command line for the first time
> (clearly) with an mtz file from an X-ray dataset. I have tried different
> iterations, but I can't seem to come up with the correct syntax for
> suppling the input labels. It gives me the list of available labels below,
> but what is the correct syntax to provide for input?
> Available labels: ['IMEAN,SIGIMEAN', 'I(+),SIGI(+),I(-),SIGI(-)',
> 'F,SIGF,DANO,SIGDANO,ISYM', 'F(+),SIGF(+),F(-),SIGF(-)', 'FreeR_flag']
> Sorry I have checked the documentation, but still managed to fail.
> Thanks for your help,
> Nick
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Thomas C Terwilliger
Laboratory Fellow, Los Alamos National Laboratory
Senior Scientist, New Mexico Consortium
100 Entrada Dr, Los Alamos, NM 87544
Email: tterwilliger at newmexicoconsortium.org
Tel: 505-431-0010
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