[phenixbb] Error message when adding ions

[Nigel Moriarty]

Ahmed

Can you upgrade to the latest version? and see if the bug repeats?

Cheers

Nigel

---
Nigel W. Moriarty
Building 33R0349, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov


On Tue, Jan 14, 2020 at 9:27 AM ahmed <bio25210 at yahoo.fr> wrote:

> Dear Phenix community,
>
> I was wondering whether you experienced previously this problem. I'm
> running the 1.17.1-3600 version under ubuntu 16. when I do refinment and
> try to add ions an error message appear :
>
> out = cStringIO.StringIO()
> NameError: global name 'cStringIO' is not defined
> CAUGHT EXCEPTION: (argument #559)
> ARGUMENT LEADING TO EXCEPTION: 6099
> Traceback (most recent cell last):
> File
> "usr/local/phenix-1.17.1-3600/modules/cctbx_project/libtbx/easy_mp.py",
> line 181, in_call_result = 0.func(arg)
> File
> "usr/local/phenix-1.17.1-3600/modules/cctbx_project/libtbx/ions/identify.py",
> line 1435, in_call_out = cStringIO.StringIO()
> NameError: global name 'cStringIO' is not defined
>
> Thanks for your help.
>
> Regards
> Ahmed
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