[phenixbb] getting non-default values in phenix.refine

Pavel Afonine pafonine at lbl.gov
Wed Dec 2 20:19:31 PST 2020


Hi Dave,

thanks for catching and reporting this. It should be --diff_params, not 
--diff-params.

I'll fix this.

phenix.refine run with no arguments shows the correct one.

Pavel

On 12/2/20 06:38, David A Case wrote:
> The top of .def files I have from (old?) phenix.refine runs says this:
>
> # Command to extract only non-defaults:
> #   phenix.refine --diff-params "cdl_002.def"
>
> But I can't get this to work:
>
> peano% phenix.refine --diff-params "cdl_002.def"
> Usage: phenix.refine [options] [reflection_file] [pdb_file] 
> [parameter_file]
>
> refine.py: error: no such option: --diff-params
>
> Is there a way to get this functionality?
>
> ...thx...dac
>
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