[phenixbb] map to model - DNA model building

Manoj saxena mks131 at gmail.com
Tue Aug 4 02:18:20 PDT 2020


    Hello,
    I am trying to fit a cryo-EM map of a DNA protein complex (3.3 A) using
the
    map to model
    in Phenix 1.18.2.3874,  with a DNA sequence input in fasta format and
the
    map as a .ccp4 file.
    However the output  model fitted in the map I am getting is many
fragmented
    PDB files and only one chain of DNA.
    What is the best way to get a higher fraction of the DNA model fitted
into
    the map, can I switch off the segmentation of map and get both strands
    fitted into the map. Or the only option is to manually build?
    Thanks for your help
    Regards
    Manoj Saxena
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20200804/99910200/attachment.htm>


More information about the phenixbb mailing list