[phenixbb] ImportError: This package should not be accessible on Python 3. Either you are trying to run from the python-future src folder or your installation of python-future is corrupted.

Darin Lory darin.lory at gmail.com
Mon May 20 15:11:04 PDT 2019


Phenix Gurus,

I'm trying to setup PyMOL(TM) 2.3.2 with Phenix 1.15.2-3472.  My pymol is
installed in

file /apps/packages/pymol/pymol
/apps/packages/pymol/pymol: symbolic link to `bin/pymol'

I setup in Phenix -> Preferences -> Graphics -> PyMol Path as
/apps/packages/pymol/bin/pymol.

Any ideas why this is happening?

My source file is /apps/packages/phenix/phenix-1.15.2-3472/phenix_env.sh
#!/bin/sh
#
export PHENIX="/apps/packages/phenix/phenix-1.15.2-3472"
export PHENIX_VERSION=1.15.2-3472
. $PHENIX/build/setpaths.sh

++++++++++++++
++++++++++++++
phenix
Already checked for new versions in last 24 hours, skipping
Could not import runpy module
Traceback (most recent call last):
  File "/apps/packages/pymol/lib/python3.7/runpy.py", line 15, in <module>
    import importlib.util
  File "/apps/packages/pymol/lib/python3.7/importlib/util.py", line 14, in
<module>
    from contextlib import contextmanager
  File "/apps/packages/pymol/lib/python3.7/contextlib.py", line 5, in
<module>
    from collections import deque
  File "/apps/packages/pymol/lib/python3.7/collections/__init__.py", line
27, in <module>
    from reprlib import recursive_repr as _recursive_repr
  File
"/apps/packages/phenix/phenix-1.15.2-3472/conda_base/lib/python2.7/site-packages/reprlib/__init__.py",
line 7, in <module>
    raise ImportError('This package should not be accessible on Python 3. '
ImportError: This package should not be accessible on Python 3. Either you
are trying to run from the python-future src folder or your installation of
python-future is corrupted.

Best regards,

-Darin

"The most exciting phrase to hear in science, the one that heralds new
discoveries, is not 'Eureka!' (I found it!) but 'That's funny ...'"
  -Issac Asimov



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Darin S. Lory
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