[phenixbb] running phenix.validation from command line
roberto at cnb.csic.es
Thu Mar 7 03:16:44 PST 2019
Did you find time to modify phenix.validation_cryoem ?
thanks for the help
On Wed, Mar 6, 2019 at 3:47 PM Pavel Afonine <pafonine at lbl.gov> wrote:
> Hi Roberto,
> I don't think we have it. I will double-check now. If we don't have it I
> will add it today so that it's available in tomorrow's build.
> On 3/6/19 06:25, Roberto Marabini wrote:
> > Hi,
> > I see that it is possible to execute phenix.validation from
> > command line by typing:
> > phenix.validation_cryoem <path to>/5ni1.cif <path to>/molprobity.mrc
> > resolution=2.2
> > The program runs smoothly and prints on screen a few hundreds of lines.
> > The more or less equivalent program in version 1.13 was
> > phenix.molprobity, when executed with the option pickle=True,
> > phenix.molprobity saved to the hard-disk a pkl file containing all data.
> > Is there an equivalent flag for phenix.validation_cryoem? where is the
> > result of executing this shell being saved?
> > thanks
> > Roberto
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