[phenixbb] Refining alternate conformation of duplex DNA

[ABHISHEK SUMAN]

Hi Pavel,

Thank you so much for providing the information and sharing the link. It
was indeed useful. It helped a lot. I am now able to do so.

Thanks
Abhishek


*________________________________________________*

*Abhishek Suman*

*Research Scholar, PhD*

C/o, Dr. Rajakumara Eerappa

Macromolecular Structural Biology Group

Department of Biotechnology

R# 517,315, Academic Block - A

Indian Institute of Technology Hyderabad

Kandi 502 285 Sangareddy

Telangana INDIA

Contact: +91 91002 74548 (O)

         +91 80843 11898 (R)

Email: abhisheks.iith at gmail.com
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On Wed, Jun 19, 2019 at 10:13 PM Pavel Afonine <pafonine at lbl.gov> wrote:

> Hi Abhishek,
>
> I'm confident you can do it, and it is explained to some degree here:
>
> "13 typical occupancy refinement scenarios and available options in
> phenix.refine"
> http://phenix-online.org/newsletter/
>
> In the GUI it should be straightforward, if not please come back to us
> with *specific* questions.
>
> Pavel
>
>
> On 6/18/19 23:48, ABHISHEK SUMAN wrote:
>
> Hello All,
>
> I am solving a X-ray crystal structure of protein-DNA complex at 2.3 Angs.
> In my structure, it seems like the the duplex DNA is bound in two different
> conformations, and both the conformations are occupied in same density. I
> wish to know how to refine the alternative conformations of the DNA duplex
> in Phenix. In am using Phenix GUI.
>
> Thanks
> Abhishek
>
>
> *______________________________________________ *
>
> *Abhishek Suman*
>
> *Research Scholar, PhD*
>
> C/o, Dr. Rajakumara Eerappa
>
> Macromolecular Structural Biology Group
>
> Department of Biotechnology
>
> R# 517,315, Academic Block - A
>
> Indian Institute of Technology Hyderabad
>
> Kandi 502 285 Sangareddy
>
> Telangana INDIA
>
> Contact: +91 91002 74548 (O)
>
>          +91 80843 11898 (R)
>
> Email: abhisheks.iith at gmail.com
> -----------------------------------------------------------------
>
> *Please don't print this e-mail or attachment unless necessary. Preserve
> trees on the planet.*
>
>
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