[phenixbb] solved: error installation dev-1.14.3405 - 1.14.3409

[Billy Poon]

Thanks for letting us know! I thought argparse was installed by default for
python 2.6. We have that package installed as well.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org


On Wed, Feb 13, 2019 at 4:56 AM Guenter Fritz <
guenter.fritz.phenix.ccp4 at gmail.com> wrote:

> Hi Billy,
>
> I figured out that argparse has not been part of python installed. Thanks
> for pointing me to python.
> Problem is solved by installing argparse:
> yum install python-argparse
>
> Cheers, guenter
>
> Hi Guenter,
>
> What version of python do you use? The error is saying that the "argparse"
> module is not available, but it should be available on the default system
> python for CentOS 6 (python 2.6.x).
>
> --
> Billy K. Poon
> Research Scientist, Molecular Biophysics and Integrated Bioimaging
> Lawrence Berkeley National Laboratory
> 1 Cyclotron Road, M/S 33R0345
> Berkeley, CA 94720
> Tel: (510) 486-5709
> Fax: (510) 486-5909
> Web: https://phenix-online.org
>
>
> On Tue, Feb 12, 2019 at 7:17 AM Guenter Fritz <
> guenter.fritz.phenix.ccp4 at gmail.com> wrote:
>
>> Dear phenix developers,
>>
>> I get errors trying to install latest builds from 1.14.3405, 3406, 3409
>> 64bit centos6 on Scientific Linux machines still running 6.6 (kernel
>> 2.6.32).
>> 1.14.3395 installed without any problem.
>>
>> The downloaded file is OK.  1.14.3409 64bit centos6 installed on Ubuntu
>> 18.04 without any problem.
>>
>> I also tried to install from source but got the same error output (see
>> below). I googeled some error outputs - looks like some python error. Do I
>> have to update finally?
>>
>> Best regards,
>>
>> Guenter
>>
>>
>> Output trying to install from source:
>>
>> [guenter at msm68 phenix-installer-dev-3409-source]$ ./install
>> --prefix=/home/software/PHENIX/1.14.3409/ --nproc=10
>> Traceback (most recent call last):
>>   File "./bin/install.py", line 20, in <module>
>>     from libtbx.auto_build import install_distribution
>>   File
>> "/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/install_distribution.py",
>> line 75, in <module>
>>     from libtbx.auto_build import install_base_packages
>>   File
>> "/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/install_base_packages.py",
>> line 28, in <module>
>>     from .package_defs import *
>>   File
>> "/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/package_defs.py",
>> line 18, in <module>
>>     from .bootstrap import Toolbox
>>   File
>> "/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/bootstrap.py",
>> line 14, in <module>
>>     import argparse
>> ImportError: No module named argparse
>>
>> Similar from an installer:
>>
>> [guenter at msm68
>> phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6]$ ./install
>> --prefix=/home/software/PHENIX/1.14.3405/
>> Traceback (most recent call last):
>>   File "./bin/install.py", line 20, in <module>
>>     from libtbx.auto_build import install_distribution
>>   File
>> "/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
>> line 75, in <module>
>>     from libtbx.auto_build import install_base_packages
>>   File
>> "/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_base_packages.py",
>> line 28, in <module>
>>     from .package_defs import *
>>   File
>> "/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/package_defs.py",
>> line 18, in <module>
>>     from .bootstrap import Toolbox
>>   File
>> "/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/bootstrap.py",
>> line 14, in <module>
>>     import argparse
>> ImportError: No module named argparse
>>
>>
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>
>
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