[phenixbb] error installation dev-1.14.3405 - 1.14.3409

[Billy Poon]

Hi Guenter,

What version of python do you use? The error is saying that the "argparse"
module is not available, but it should be available on the default system
python for CentOS 6 (python 2.6.x).

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org


On Tue, Feb 12, 2019 at 7:17 AM Guenter Fritz <
guenter.fritz.phenix.ccp4 at gmail.com> wrote:

> Dear phenix developers,
>
> I get errors trying to install latest builds from 1.14.3405, 3406, 3409
> 64bit centos6 on Scientific Linux machines still running 6.6 (kernel
> 2.6.32).
> 1.14.3395 installed without any problem.
>
> The downloaded file is OK.  1.14.3409 64bit centos6 installed on Ubuntu
> 18.04 without any problem.
>
> I also tried to install from source but got the same error output (see
> below). I googeled some error outputs - looks like some python error. Do I
> have to update finally?
>
> Best regards,
>
> Guenter
>
>
> Output trying to install from source:
>
> [guenter at msm68 phenix-installer-dev-3409-source]$ ./install
> --prefix=/home/software/PHENIX/1.14.3409/ --nproc=10
> Traceback (most recent call last):
>   File "./bin/install.py", line 20, in <module>
>     from libtbx.auto_build import install_distribution
>   File
> "/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/install_distribution.py",
> line 75, in <module>
>     from libtbx.auto_build import install_base_packages
>   File
> "/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/install_base_packages.py",
> line 28, in <module>
>     from .package_defs import *
>   File
> "/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/package_defs.py",
> line 18, in <module>
>     from .bootstrap import Toolbox
>   File
> "/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/bootstrap.py",
> line 14, in <module>
>     import argparse
> ImportError: No module named argparse
>
> Similar from an installer:
>
> [guenter at msm68 phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6]$
> ./install --prefix=/home/software/PHENIX/1.14.3405/
> Traceback (most recent call last):
>   File "./bin/install.py", line 20, in <module>
>     from libtbx.auto_build import install_distribution
>   File
> "/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
> line 75, in <module>
>     from libtbx.auto_build import install_base_packages
>   File
> "/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_base_packages.py",
> line 28, in <module>
>     from .package_defs import *
>   File
> "/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/package_defs.py",
> line 18, in <module>
>     from .bootstrap import Toolbox
>   File
> "/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/bootstrap.py",
> line 14, in <module>
>     import argparse
> ImportError: No module named argparse
>
>
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