[phenixbb] Rosetta installation problems

[Simone Pellegrino]

Hi Nigel,

to install Phenix I followed the recommended procedure as specified in the
online manual.
Then to install Rosetta I finally followed one of the response on the
Rosetta forum (can't remember now the exact thread)
 and I came to this last error of the

ImportError: No module named parse_tag

Many thnaks for your help.
Best
Simone


Il giorno sab 6 ott 2018 alle ore 17:41 Nigel Moriarty <nwmoriarty at lbl.gov>
ha scritto:

> This looks very strange. The error is in the file in the installer
> directories. This should not be the case. Can you provide more details on
> what you did to install Phenix etc.
>
> Cheers
>
> Nigel
>
> ---
> Nigel W. Moriarty
> Building 33R0349, Molecular Biophysics and Integrated Bioimaging
> Lawrence Berkeley National Laboratory
> Berkeley, CA 94720-8235
> Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
> Fax   : 510-486-5909       Web  : CCI.LBL.gov
>
>
> On Sat, Oct 6, 2018 at 4:15 AM Simone Pellegrino <simonpelle81 at gmail.com>
> wrote:
>
>> Dear all,
>>
>> I encounter a problem running the rosetta.run_tests after having compiled
>> rosetta for interfacing with phenix. I have the following error:
>>
>>
>> DEBUG dumping error message
>> ERROR: Rosetta exited with status 139
>> stderr output:
>> Segmentation fault (core dumped)
>> Traceback (most recent call last):
>>   File
>> "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/build/../modules/phenix/phenix/command_line/rosetta_refine.py",
>> line 307, in <module>
>>     run(sys.argv[1:], create_dir=True)
>>   File
>> "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/build/../modules/phenix/phenix/command_line/rosetta_refine.py",
>> line 191, in run
>>     debug=params.output.debug)
>>   File
>> "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/modules/phenix/phenix/rosetta/refine.py",
>> line 313, in __init__
>>     self.run_jobs()
>>   File
>> "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/modules/phenix/phenix/rosetta/refine.py",
>> line 387, in run_jobs
>>     check_result(result)
>>   File
>> "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/modules/phenix/phenix/rosetta/refine.py",
>> line 378, in check_result
>>     raise RuntimeError("Aborted due to error in job %d." % result.job_id)
>> RuntimeError: Aborted due to error in job 1.
>>
>> Could you please help me in solving this issue?
>> Many thanks in advance
>> Best regards
>> Simone
>>
>> --
>> Dr. Simone Pellegrino
>> I.G.B.M.C.
>> 1, Rue Laurent Fries
>> 67404 Illkirch Cedex
>> France
>> _______________________________________________
>> phenixbb mailing list
>> phenixbb at phenix-online.org
>> http://phenix-online.org/mailman/listinfo/phenixbb
>> Unsubscribe: phenixbb-leave at phenix-online.org
>
>

-- 
Dr. Simone Pellegrino
I.G.B.M.C.
1, Rue Laurent Fries
67404 Illkirch Cedex
France
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20181006/97428d48/attachment.htm>