[phenixbb] Rosetta installation problems

[Nigel Moriarty]

This looks very strange. The error is in the file in the installer
directories. This should not be the case. Can you provide more details on
what you did to install Phenix etc.

Cheers

Nigel

---
Nigel W. Moriarty
Building 33R0349, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov


On Sat, Oct 6, 2018 at 4:15 AM Simone Pellegrino <simonpelle81 at gmail.com>
wrote:

> Dear all,
>
> I encounter a problem running the rosetta.run_tests after having compiled
> rosetta for interfacing with phenix. I have the following error:
>
>
> DEBUG dumping error message
> ERROR: Rosetta exited with status 139
> stderr output:
> Segmentation fault (core dumped)
> Traceback (most recent call last):
>   File
> "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/build/../modules/phenix/phenix/command_line/rosetta_refine.py",
> line 307, in <module>
>     run(sys.argv[1:], create_dir=True)
>   File
> "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/build/../modules/phenix/phenix/command_line/rosetta_refine.py",
> line 191, in run
>     debug=params.output.debug)
>   File
> "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/modules/phenix/phenix/rosetta/refine.py",
> line 313, in __init__
>     self.run_jobs()
>   File
> "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/modules/phenix/phenix/rosetta/refine.py",
> line 387, in run_jobs
>     check_result(result)
>   File
> "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/modules/phenix/phenix/rosetta/refine.py",
> line 378, in check_result
>     raise RuntimeError("Aborted due to error in job %d." % result.job_id)
> RuntimeError: Aborted due to error in job 1.
>
> Could you please help me in solving this issue?
> Many thanks in advance
> Best regards
> Simone
>
> --
> Dr. Simone Pellegrino
> I.G.B.M.C.
> 1, Rue Laurent Fries
> 67404 Illkirch Cedex
> France
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