[phenixbb] View Solvent Mask

Dorothee Liebschner dcliebschner at lbl.gov
Fri Mar 9 13:27:00 PST 2018

Hi Ben,

For what purpose do you want to prevent the bulk solvent mask of entering
For omit maps, use polder maps. If the ligand is placed, use the default
option. If nothing is placed yet, you can use the box option (
https://www.phenix-online.org/documentation/reference/polder_box.html) or
place a dummy ligand in the area.

Best wishes,


On Fri, Mar 9, 2018 at 10:11 AM, Pavel Afonine <pafonine at lbl.gov> wrote:

> How can I modify the mask so it doesn't enter pockets within my model?
> This is what polder map is for: stop solvent entering the region in
> question.
> Pavel
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
> Unsubscribe: phenixbb-leave at phenix-online.org
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20180309/5f9c55e2/attachment-0001.htm>

More information about the phenixbb mailing list