[phenixbb] Questions about the Autosol water placing option

Kaibo Zhang zhang644 at purdue.edu
Wed Mar 7 11:53:42 PST 2018


Helllo,
I was using AutoSol GUI for MR-SAD of my data and trying to  turn off
"place waters in refinement". However, the output pdb files still got
waters in them. I did check the run log file and confirmed both the
"place_waters" and the "flood_with_waters" flags were set to false. But in
the later session, it still recorded "adding waters in refinement".

Is there any parameters I should adjust to avoid adding waters during the
Autosol run. Or is it just turned on in the end in order to calculate
R_work/free, and doesn't affect your phasing solution?

Look forward to your responses. Thank you in advance!

 Regards
Kaibo

*Kaibo*
PULSe, Purdue University
Hockmeyer Hall, Room 321
240 S. Martin Jischke Drive, West Lafayette, IN 47907
Telephone: 765-337-1955
E-mail: zhang644 at purdue.edu
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