[phenixbb] Fourier_shell_correlation_(FSC)_in_cryo-EM_refinement

oleg at quantumbioinc.com oleg at quantumbioinc.com
Thu Jan 18 19:01:34 PST 2018

phenix.model_vs_map crashes with a Python exception.   

-----Original Message-----
From: "Takanori Nakane" <tnakane at mrc-lmb.cam.ac.uk>
Sent: Thursday, January 18, 2018 10:44am
To: oleg at quantumbioinc.com
Cc: phenixbb at phenix-online.org
Subject: Re: [phenixbb] Fourier_shell_correlation_(FSC)_in_cryo-EM_refinement

Hi Oleg,

Do you mean FSC between a model and a map?
You can calculate it with phenix.model_vs_map.

Best regards,

Takanori Nakane

> I started to do some refinements of cryo-EM structures. But I could not
> find FSC (e.g. FSC average) quality metrics in the refinement log. Is it
> because of the real space refinement methodology or some features need
> be activated? Please advise
> Thanks
> Oleg ?
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