[phenixbb] Install Phenix 2926 on Linux Fail

[Billy Poon]

Hi Xiao,

Can you try using the CentOS 6 installer instead? That is more compatible
with newer versions of linux. Also, which version of Ubuntu MATE are you
using? We only test on currently supported LTS versions of Ubuntu (14.04,
16.04, and maybe 12.04), which I guess have corresponding versions in
Ubuntu MATE.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org

On Wed, Oct 18, 2017 at 10:33 AM, Xiao Lei <xiaoleiusc at gmail.com> wrote:

> Dear All,
>
> I was trying to install Phenix 2926 on Ubuntu Mate, after type sudo
> ./install I got the following fail message:
> =========================================================
>                           Phenix Installation
>
>                           version: dev-2926
>                      machine type: intel-linux-2.6-x86_64
>                        OS version: 4.4.0-97-generic
>                       destination: /usr/local/phenix-dev-2926
>                   # of processors: 4
>     ============================================================
> =============
>
> Configuring Phenix components...
> Traceback (most recent call last):
>   File "./bin/install.py", line 275, in <module>
>     installer(sys.argv[1:]).install()
>   File "/home/linchenlab/Downloads/phenix-installer-dev-2926-
> intel-linux-2.6-centos5/lib/libtbx/auto_build/install_distribution.py",
> line 197, in install
>     self.install_from_binary()
>   File "/home/linchenlab/Downloads/phenix-installer-dev-2926-
> intel-linux-2.6-centos5/lib/libtbx/auto_build/install_distribution.py",
> line 319, in install_from_binary
>     self.reconfigure(log=log)
>   File "/home/linchenlab/Downloads/phenix-installer-dev-2926-
> intel-linux-2.6-centos5/lib/libtbx/auto_build/install_distribution.py",
> line 379, in reconfigure
>     call(args=args, log=log, verbose=self.options.verbose)
>   File "/home/linchenlab/Downloads/phenix-installer-dev-2926-
> intel-linux-2.6-centos5/lib/libtbx/auto_build/installer_utils.py", line
> 81, in call
>     raise RuntimeError("Call to '%s' failed with exit code %d" % (args,
> rc))
> RuntimeError: Call to '/usr/local/phenix-dev-2926/base/bin/python
> /usr/local/phenix-dev-2926/modules/cctbx_project/libtbx/configure.py
> --current_working_directory /usr/local/phenix-dev-2926/build
> --command_version_suffix dev-2926 phenix phaser solve_resolve labelit dials
> xia2 iota prime' failed with exit code 1
>
>
> What I need to do to fix this?
>
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