[phenixbb] chain and residue ID in phenix.erraser
uschulze-gahmen at lbl.gov
Wed Nov 8 11:34:46 PST 2017
Yes, chainID:residue number (N:32) is working. Thanks.
It might be helpful for others to include this syntax in the error message.
In general, erraser is working great for RNA modelling at medium to low
On Mon, Nov 6, 2017 at 9:43 PM, Andy Watkins <andy.watkins2 at gmail.com>
> Try N:32, i.e., separate chain and residue number with a colon. I'm not
> sure what other formats might be supported, but the colon-including format
> definitely is.
> <http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> Virus-free.
> On Mon, Nov 6, 2017 at 8:30 PM, Ursula Schulze-Gahmen <
> uschulze-gahmen at lbl.gov> wrote:
>> I am trying to run phenix.erraser, but I am not able to define the single
>> residue for rebuilding correctly. I am getting error messaheg: Please make
>> sure that you include both the chain ID and residue number, for example
>> I want to rebuild nucleotide G32 in chain N, and defined the residue as
>> N32. That is not correct. What would be the correct syntax for this case?
>> Ursula Schulze-Gahmen, Ph.D.
>> Project Scientist
>> UC Berkeley, QB3
>> 360 Stanley Hall #3220
>> Berkeley, CA 94720-3220
>> (510) 643 9491 <(510)%20643-9491>
>> phenixbb mailing list
>> phenixbb at phenix-online.org
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Ursula Schulze-Gahmen, Ph.D.
UC Berkeley, QB3
360 Stanley Hall #3220
Berkeley, CA 94720-3220
(510) 643 9491
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