[phenixbb] Phenix installation on manjaro

[Billy Poon]

Sorry, can you try running that command again, but in the

/usr/local/phenix-dev-2666/build

directory? The command needs to run in the same directory specified by the
--current_working_directory flag.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org

On Mon, Feb 6, 2017 at 4:04 PM, Murpholino Peligro <murpholinox at gmail.com>
wrote:

> [eva03 phenix-installer-dev-2666-intel-linux-2.6-x86_64-centos5]#
> /usr/local/phenix-dev-2666/base/bin/python /usr/local/phenix-dev-2666/
> modules/cctbx_project/libtbx/configure.py --current_working_directory
> /usr/local/phenix-dev-2666/build --command_version_suffix dev-2666 phenix
> phaser solve_resolve labelit dials xia2 iota prime
> Traceback (most recent call last):
>   File "/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py",
> line 22, in <module>
>     if not run():
>   File "/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py",
> line 17, in run
>     libtbx.env_config.cold_start(sys.argv)
>   File "/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/env_config.py",
> line 2294, in cold_start
>     " --current_working_directory %s" % show_string(build_path))
> RuntimeError: Not equivalent to the current working directory:
> --current_working_directory "/usr/local/phenix-dev-2666/build"
>
> I am trying the centos5 version. I'll try the centos6 ...
>
> 2017-02-03 15:39 GMT-06:00 Billy Poon <bkpoon at lbl.gov>:
>
>> Hi,
>>
>> Can you provide the output for
>>
>> '/usr/local/phenix-dev-2666/base/bin/python
>> /usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py
>> --current_working_directory /usr/local/phenix-dev-2666/build
>> --command_version_suffix dev-2666 phenix phaser solve_resolve labelit dials
>> xia2 iota prime'
>>
>> That is the command that is failing.
>>
>> Also, which installer are you using? The CentOS 6 installer is generally
>> more compatible with more recent versions.
>>
>> --
>> Billy K. Poon
>> Research Scientist, Molecular Biophysics and Integrated Bioimaging
>> Lawrence Berkeley National Laboratory
>> 1 Cyclotron Road, M/S 33R0345
>> Berkeley, CA 94720
>> Tel: (510) 486-5709
>> Fax: (510) 486-5909
>> Web: https://phenix-online.org
>>
>> On Thu, Feb 2, 2017 at 2:02 PM, Murpholino Peligro <murpholinox at gmail.com
>> > wrote:
>>
>>> Dear all.
>>> has anyone been lucky with the installation of phenix in manjaro or any
>>> other archlinux-based distribution?
>>>
>>> Thanks
>>> Ps. Error looks like http://pastebin.com/WzwrbK8W
>>>
>>> _______________________________________________
>>> phenixbb mailing list
>>> phenixbb at phenix-online.org
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>>>
>>
>>
>
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