[phenixbb] Crashing Phenix

[Billy Poon]

Hi Reza,

For Debian/Ubuntu, please try the CentOS 6 installer. That is more
compatible with more recent linux distributions.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org

On Tue, Nov 22, 2016 at 6:07 PM, Reza Khayat <rkhayat at ccny.cuny.edu> wrote:

> ​Debian 8 (jessie)
>
>
>
> Reza Khayat, PhD
> Assistant Professor
> City College of New York
> Department of Chemistry
> New York, NY 10031
> ------------------------------
> *From:* Billy Poon <bkpoon at lbl.gov>
> *Sent:* Tuesday, November 22, 2016 6:04 PM
>
> *To:* Reza Khayat
> *Cc:* phenixbb at phenix-online.org
> *Subject:* Re: [phenixbb] Crashing Phenix
>
> Hi Reza,
>
> What is the linux distribution and version that you are using?
>
> --
> Billy K. Poon
> Research Scientist, Molecular Biophysics and Integrated Bioimaging
> Lawrence Berkeley National Laboratory
> 1 Cyclotron Road, M/S 33R0345
> Berkeley, CA 94720
> Tel: (510) 486-5709
> Fax: (510) 486-5909
> Web: https://phenix-online.org
>
> On Tue, Nov 22, 2016 at 5:22 PM, Reza Khayat <rkhayat at ccny.cuny.edu>
> wrote:
>
>> Hi,
>>
>>
>> Typing locale generates:
>>
>> LANG=en_US.UTF-8
>>
>> ...
>>
>> LC_ALL=
>>
>>
>> Running
>>
>> sudo locale-gen "en_US.UTF-8"
>>
>> does not change anything
>>
>>
>> modifying /etc/environment to include
>>
>> LC_ALL=en_US.UTF-8
>> LANG=en_US.UTF-8​
>>
>> Then Running locale indicates that LC_ALL=en_US.UTF-8. However, the
>> problem persists.
>>
>>
>> Reza
>>
>>
>>
>> Reza Khayat, PhD
>> Assistant Professor
>> City College of New York
>> Department of Chemistry
>> New York, NY 10031
>> ------------------------------
>> *From:* Billy Poon <bkpoon at lbl.gov>
>> *Sent:* Tuesday, November 22, 2016 4:57 PM
>> *To:* Reza Khayat
>> *Cc:* phenixbb at phenix-online.org
>> *Subject:* Re: [phenixbb] Crashing Phenix
>>
>> Hi Reza,
>>
>> Do you have the LANG or LC_ALL environment variables set? If you have
>> LANG can you try setting LC_ALL to the same value? Also, make sure that
>> there is a "UTF-8" somewhere. So for English (U.S.), LC_ALL should be set
>> to en_US.UTF-8.
>>
>> --
>> Billy K. Poon
>> Research Scientist, Molecular Biophysics and Integrated Bioimaging
>> Lawrence Berkeley National Laboratory
>> 1 Cyclotron Road, M/S 33R0345
>> Berkeley, CA 94720
>> Tel: (510) 486-5709
>> Fax: (510) 486-5909
>> Web: https://phenix-online.org
>>
>> On Tue, Nov 22, 2016 at 3:38 PM, Reza Khayat <rkhayat at ccny.cuny.edu>
>> wrote:
>>
>>> Hi,
>>>
>>>
>>> I recently installed phenix-1.11.1-2575 (CentOS 5 flavor) and am getting
>>> the following crashes when trying to launch the GUI.
>>>
>>> 15:31:23: Cannot set locale to language "English".
>>> 15:31:23: locale 'en_GB' cannot be set.
>>>
>>> phenix-1.10.1-2155 (on the same system) also gives me a locale 'en_GB'
>>> error but the GUI launches and I can run programs.
>>>
>>>
>>> Any suggestions on how to fix this problem? Thanks.
>>>
>>>
>>> Best wishes,
>>> Reza
>>>
>>> Reza Khayat, PhD
>>> Assistant Professor
>>> City College of New York
>>> Department of Chemistry
>>> New York, NY 10031
>>> ------------------------------
>>> *From:* phenixbb-bounces at phenix-online.org <
>>> phenixbb-bounces at phenix-online.org> on behalf of Pavel Afonine <
>>> pafonine at lbl.gov>
>>> *Sent:* Wednesday, August 3, 2016 7:39 AM
>>> *To:* phenixbb at phenix-online.org
>>> *Subject:* Re: [phenixbb] Realspace refinement
>>>
>>>
>>> Hi Reza,
>>> yes, it does.
>>>
>>> Pavel
>>>
>>> On 8/1/16 04:16, Reza Khayat wrote:
>>>
>>> Hi,
>>>
>>>
>>>
>>> Does realspace refinement consider temperature factors during
>>> refinement? Thanks.
>>>
>>>
>>>
>>> Best wishes,
>>> Reza
>>>
>>>
>>>
>>> Reza Khayat, PhD
>>>
>>> Assistant Professor
>>>
>>> Department of Chemistry
>>>
>>> City College of New York
>>>
>>> 85 Saint Nicholas Terrace, CDI 2.318
>>>
>>> New York, NY 10031
>>>
>>> http://www.khayatlab.org/
>>>
>>> 212-650-6070
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> phenixbb mailing listphenixbb at phenix-online.orghttp://phenix-online.org/mailman/listinfo/phenixbb
>>> Unsubscribe: phenixbb-leave at phenix-online.org
>>>
>>>
>>>
>>> _______________________________________________
>>> phenixbb mailing list
>>> phenixbb at phenix-online.org
>>> http://phenix-online.org/mailman/listinfo/phenixbb
>>> Unsubscribe: phenixbb-leave at phenix-online.org
>>>
>>
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20161123/23373ec7/attachment.htm>