[phenixbb] rosetta_refine connecting non-consecutive residues around break in chain

Nigel Moriarty nwmoriarty at lbl.gov
Fri May 27 12:53:01 PDT 2016


Can you send me the files. This should not happen (and does not in
phenix.refine) so I'd like to determine what is going wrong.



Nigel W. Moriarty
Building 33R0349, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

On Thu, May 26, 2016 at 6:34 PM, wtempel <wtempel at gmail.com> wrote:

> Hello,
> can one prevent rosetta_refine from connecting two residues that surround
> a gap? For example, how do I keep near-by residues 108 and 115 apart when
> 109 through 114 are missing?
> Thank you.
> Wolfram Tempel
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