[phenixbb] Constrained groups for occupancy refinment

Jan Abendroth jan.abendroth at gmail.com
Mon Mar 7 10:02:10 PST 2016


Hi all,
I have a case where a residue is in two alternative conformations for chain
A and chain B. This residue (Arg 62) happens to be close to its NCS mate,
such that only conformations A for both chains or only conformations B can
take place at the same time.

I tried to follow guidance from the CNG newsletter 2015/07 and set up the
constrained groups as shown below. However, the refinement crashes with an
AtomSelectionError.

Any ideas what I could have done differently?

Cheers,
Jan

refinement {

 refine {

 occupancies {

 constrained_group {

 selection = chain A and resseq 62 and altloc A or \

             chain B and resseq 62 and altloc A or

 selection = chain A and resseq 62 and altloc B or \

             chain B and resseq 62 and altloc B or

 }

 }

 }

}

-- 
Jan Abendroth
Emerald Biostructures
Seattle / Bainbridge Island, WA, USA
home: Jan.Abendroth_at_gmail.com
work: JAbendroth_at_embios.com
http://www.emeraldbiostructures.com
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