[phenixbb] phenix.real_space_refine GUI
pafonine at lbl.gov
Wed Jun 1 14:50:53 PDT 2016
Hi Phenix users,
since I had to answer this very same question off-list three times in
past 48 hours, I thought I post this for future reference...
Yes, thanks *Billy* there is a GUI for phenix.real_space_refine (tool to
refine atomic models against maps, such as cryo-EM maps)! To give it a
try, you need:
1) Get the latest nightly build, dev-2427 for instance:
2) Enable alpha-test programs in Phenix GUI. To do this:
-- start Phenix GUI;
-- go to Preferences and tick "Enable alpha-test programs and
-- restart the GUI (close down, then start again);
-- phenix.real_space_refine will be available in Refinement section
on the right (Real-space refinement [alpha]).
Note, it has a very handy feature to see/explore/edit
secondary-structure restraints graphically.
Also note that *this is alpha-test version meaning that glitches are not
unexpected*! However your feedback will help to improve it, so please
let us know should you encounter problems, have suggestions or found bug(s)!
All the best,
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