[phenixbb] Rebuild fails in Rosetta-MR

Rhys Grinter rhys.grinter at monash.edu
Sun Feb 21 21:13:31 PST 2016


Dear all,

I'm currently trying to improve an model for a difficult MR problem using
Rosetta-MR,

When the program gets to the Rebuild stage it fails with the following
message:

*Error message:*

child process stderr output:

  command: 'sh
.../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/run_rebuild.sh"'


.../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/run_rebuild.sh:
line 5:  8996 Trace/BPT trap: 5
"/Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease"
@"rebuild.flags" > "rebuild.log" 2>&1

Failed to run REBUILD

Sorry: Failed to run REBUILD...see log file in
.../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/rebuild.log

Sorry: mr_rosetta failed...

Sorry routine failed

Please see log file for full error message

*In the rebuild logfile:*

dyld: lazy symbol binding failed: Symbol not found: ___sincos_stret
  Referenced from:
/Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___sincos_stret
  Referenced from:
/Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease
  Expected in: /usr/lib/libSystem.B.dylib

Has anyones experienced this error?

Cheers,

Rhys

-- 
Dr Rhys Grinter
Sir Henry Wellcome Fellow
Monash University
+61 (0)3 9902 9213
+61 (0)403 896 767
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