[phenixbb] phenix install error on linux

Min Zheng m_zhen01 at uni-muenster.de
Thu Feb 11 01:07:55 PST 2016


Dear All,

I am installing phenix, and get the following error:

    ==========================================================================
                          Phenix Installation

                          version: 1.10.1-2155
                     machine type: intel-linux-2.6-x86_64
                       OS version: 3.11.10-29-default
                      destination: /home/m/m_zhen01/phenix-1.10.1-2155
                  # of processors: 20
    =========================================================================

Configuring Phenix components...


Traceback (most recent call last):
  File "./bin/install.py", line 262, in <module>
    installer(sys.argv[1:]).install()
  File
  "/nfsexp/homes/m_zhen01/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py",
  line 185, in install
    self.install_from_binary()
  File
  "/nfsexp/homes/m_zhen01/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py",
  line 295, in install_from_binary
    self.reconfigure(log=log)
  File
  "/nfsexp/homes/m_zhen01/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py",
  line 460, in reconfigure
    call(args=args, log=log, verbose=self.options.verbose)
  File
  "/nfsexp/homes/m_zhen01/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/installer_utils.py",
  line 81, in call
    raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc))
RuntimeError: Call to '/home/m/m_zhen01/phenix-1.10.1-2155/base/bin/python
/home/m/m_zhen01/phenix-1.10.1-2155/modules/cctbx_project/libtbx/configure.py
--current_working_directory /home/m/m_zhen01/phenix-1.10.1-2155/build
--command_version_suffix 1.10.1-2155 phenix phaser solve_resolve labelit'
failed with exit code 1

m_zhen01 at LIBRA:~/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5>
/home/m/m_zhen01/phenix-1.10.1-2155/base/bin/python
Traceback (most recent call last):
  File "/usr/lib64/python2.7/site.py", line 564, in <module>
    main()
  File "/usr/lib64/python2.7/site.py", line 546, in main
    known_paths = addusersitepackages(known_paths)
  File "/usr/lib64/python2.7/site.py", line 276, in addusersitepackages
    user_site = getusersitepackages(kind)
  File "/usr/lib64/python2.7/site.py", line 244, in getusersitepackages
    user_base = getuserbase() # this will also set USER_BASE
  File "/usr/lib64/python2.7/site.py", line 230, in getuserbase
    from sysconfig import get_config_var
  File "/usr/lib64/python2.7/sysconfig.py", line 10, in <module>
    'stdlib': '{base}/'+sys.lib+'/python{py_version_short}',
AttributeError: 'module' object has no attribute 'lib'


Thanks in advance,
Min


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