[phenixbb] Problems installing 1.10.1 on RHEL 6.3

David Briggs drdavidcbriggs at gmail.com
Tue Feb 2 03:13:20 PST 2016


Hi Phenix,

We are trying to upgrade Phenix on our Linux box running RHEL 6.3,
 kernel 2.6.32-279.14.1.el6.x86_64.

I have attempted to install the Centos 5 build and I get an error message
during installation:

Configuring Phenix components... Traceback (most recent call last): File
"./bin/install.py", line 262, in <module> installer(sys.argv[1:]).install()
File
"/home/public/packages/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py",
line 185, in install self.install_from_binary() File
"/home/public/packages/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py",
line 295, in install_from_binary self.reconfigure(log=log) File
"/home/public/packages/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py",
line 460, in reconfigure call(args=args, log=log,
verbose=self.options.verbose) File
"/home/public/packages/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/installer_utils.py",
line 81, in call raise RuntimeError("Call to '%s' failed with exit code %d"
% (args, rc)) RuntimeError: Call to
'/home/public/packages/phenix-1.10.1-2155/base/bin/python
/home/public/packages/phenix-1.10.1-2155/modules/cctbx_project/libtbx/configure.py
--current_working_directory /home/public/packages/phenix-1.10.1-2155/build
--command_version_suffix 1.10.1-2155 phenix phaser solve_resolve labelit'
failed with exit code -11

When I attempt install the CentOS6 build I can install Phenix, but when I
try and launch it I get a different error message:

Traceback (most recent call last): File
"/home/public/packages/phenix-1.10.1-2155/build/../modules/phenix/wxGUI2/command_line/main.py",
line 23, in <module> run(sys.argv[1:]) File
"/home/public/packages/phenix-1.10.1-2155/build/../modules/phenix/wxGUI2/command_line/main.py",
line 16, in run from wxGUI2 import App File
"/home/public/packages/phenix-1.10.1-2155/modules/phenix/wxGUI2/App.py",
line 15, in <module> import wx File
"/home/public/packages/phenix-1.10.1-2155/base/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/__init__.py",
line 45, in <module> from wx._core import * File
"/home/public/packages/phenix-1.10.1-2155/base/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py",
line 4, in <module> import _core_ ImportError:
/home/public/packages/phenix-1.10.1-2155/base/bin/../lib/libXrender.so.1:
undefined symbol: _XGetRequest


Should I give up and attempt to compile from the source, or is there a fix
for these issues?

Kind regards,

Dave
-- 

--

David Briggs
about.me/david_briggs
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