[phenixbb] Asymmetric unit content

Pavel Afonine pafonine at lbl.gov
Mon Dec 12 07:06:35 PST 2016


You must have a tough supervisor then, I afraid -;) Or.. there may be 
something else about the structure and data that makes your boss 
suspicious... I suspect it is a 7A resolution thing?
Pavel

On 12/12/16 22:56, Sharan Karade wrote:
> I have calculated Mathews coefficient also, the probability shows five 
> molecules in ASU. But it fails to convince my supervisor.
>
> On Mon, Dec 12, 2016 at 6:52 AM, <oleg at quantumbioinc.com 
> <mailto:oleg at quantumbioinc.com>> wrote:
>
>     Compute Matthews coefficient.
>     e.g. using
>     http://www.ruppweb.org/mattprob/default.html
>     <http://www.ruppweb.org/mattprob/default.html>
>
>     Oleg
>
>
>
>     -----Original Message-----
>     From: "Sharan Karade" <sharankarade at gmail.com
>     <mailto:sharankarade at gmail.com>>
>     Sent: Sunday, December 11, 2016 6:05am
>     To: phenixbb at phenix-online.org <mailto:phenixbb at phenix-online.org>
>     Subject: [phenixbb] Asymmetric unit content
>
>     _______________________________________________
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>     phenixbb at phenix-online.org <mailto:phenixbb at phenix-online.org>
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>     Unsubscribe: phenixbb-leave at phenix-online.orgDear all,
>
>                I have solved the structure in C121 space group, having
>     five
>     molecules in asymmetric unit, my supervisor have doubt about the fifth
>     molecule becoz of poor density fit, if i delete the fifth
>     molecule, there
>     is a space for the molecule and crystal is not continuous, i
>     calculated
>     difference map from Phenix by deleting fifth molecule and got the Map
>     showing presence of molecule. My supervisor want me to get SetMet
>     data, but
>     crystals are diffracting poor (7A). Is there any way to convince
>     my guide.
>
>
>     advance thanks for valuable suggestions.
>
>     --
>     Sharan
>     C/O Dr. J V Pratap
>     Senior Research Fellow,
>     CSIR-Central Drug Research Institute,
>     Lucknow
>
>     Oleg Borbulevych, Ph.D.
>     Staff Scientist
>     QuantumBio, Inc.
>     2790 W. College Ave.
>     State College, PA 16801
>     E-mail: oborbulevych at yahoo.com <mailto:oborbulevych at yahoo.com>,
>     oleg at quantumbioinc.com <mailto:oleg at quantumbioinc.com>
>     Linkedin Professional Profile:
>     http://www.linkedin.com/pub/oleg-borbulevych/22/454/b80
>     <http://www.linkedin.com/pub/oleg-borbulevych/22/454/b80>
>
>
>
>
> -- 
> Sharan
> C/O Dr. J V Pratap
> Senior Research Fellow,
> CSIR-Central Drug Research Institute,
> Lucknow
>
>
>
>
>
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