[phenixbb] build two helix run in opposite direction and set half occupancy or each in Coot
pafonine at lbl.gov
Fri Apr 29 18:55:28 PDT 2016
> One thing I learned is that: beside setting half occupancy, I also
> need to set altloc (alternative locations), so that the subsequent
> refine program (either Refmac or Phenix) would not think two peptides
> are too close and have repulsion to each other.
If these are alternative conformations then starting occupancy does not
matter - phenix.refine does not use occupancy value to decided about how
to refine occupancies of atoms in alternative conformations.
All the best,
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