[phenixbb] Autobuild

Sam Tang samtys0910 at gmail.com
Wed Apr 20 09:01:37 PDT 2016


Dear colleagues

I have recently downloaded a Windows GUI version of Phenix 1.10.1-2155.
When I used AutoBuild these few days it keeps turning out the following
errors:

Job 1 failed:
  child process stderr output:
  command: ['phenix.autobuild',
'C:\\Users\\pcshaw\\Desktop\\NPAproc\\B13_proc\\AutoBuild_run_4_\\TEMP0\\PARAMS_1.eff',
'write_run_directory_to_file="C:\\Users\\pcshaw\\Desktop\\NPAproc\\B13_proc\\AutoBuild_run_4_\\TEMP0\\INFO_FILE_1"']
  Traceback (most recent call last):
    File "C:\Program
Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\build\..\modules\phenix\phenix/command_line\autobuild.py",
line 228, in <module>
      run_autobuild=run_autobuild(args=sys.argv[1:])
    File "C:\Program
Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\wizard_command_line.py",
line 564, in __init__
      self.RunWizard()
    File "C:\Program
Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\wizard_command_line.py",
line 1001, in RunWizard
      self.runWizard.run()
    File "C:\Program
Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\wizard_command_line.py",
line 137, in run
      self.Wizard.Run(info='script')
    File "C:\Program
Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\AutoBaseExtend.py",
line 836, in Run
      self.DoNextMethod()
    File "C:\Program
Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\AutoBaseExtend.py",
line 1004, in DoNextMethod
      raise AssertionError, line
  AssertionError: Traceback (most recent call last):
    File "C:\Program
Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\AutoBaseExtend.py",
line 987, in DoNextMethod
      self.CarryOutBest()     # to be obtained after it is finished
    File "C:\Program
Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\AutoBaseExtend.py",
line 2147, in CarryOutBest
      getattr(self,str(self.application_method))()  # call this fn
    File "C:\Program
Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\wizards\AutoBuild.py",
line 2372, in AutoBuild_build_cycle
      self.AutoBuild_rebuild_cycle_run()
    File "C:\Program
Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\wizards\AutoBuild.py",
line 4626, in AutoBuild_rebuild_cycle_run
      refine_2fofc=refine_2fofc)
    File "C:\Program
Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\wizards\AutoBuild.py",
line 5500, in AutoBuild_resolve_with_model
      hklout=hklout,labin=labin)
  UnboundLocalError: local variable 'labin' referenced before assignment

Could I please enquire if these are due to mis-setting of parameters or in
fact problems related to my recent installation?

Yet another question on my mind is, is AutoMR still supported in this
Windows version? I can now no longer find it in the GUI while it used to be
there in the 1.7 Mac version.

Kind regards

Sam

Biochemistry Programme, School of Life Sciences, CUHK
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