[phenixbb] phenix.AmberPrep

[Nigel Moriarty]

Jing-Yuan

When you ran the

phenix.build_amber_interface


did that run OK? Please send me the output.

Cheers

Nigel

---
Nigel W. Moriarty
Building 33R0349, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

On Fri, Apr 1, 2016 at 10:50 AM, Liu, Jing-Yuan <jliu2 at iu.edu> wrote:

> Dear PHENIX Developers,
>
> I would like to perform phenix.refine using amber gradient. I installed
> AmberTools 15 and the newest version of Phenix by following the instruction
> found here
>
> http://www.phenix-online.org/documentation/reference/amber.html.
> <http://www.phenix-online.org/documentation/reference/amber.html>
>
> However, when I ran"phenix.AmberPrep", it complains "phenix.AmberPrep not
> found". In dead, I cannot find any binary named "phenix.AmberPrep".
> However, it looks to me that phenix is installed OK and so does AmberTools
> 15. I checked each step of my installation, I could not find anywhere is
> wrong. Can you please help me out? Thank you!
>
>
> Sincerely,
> Jing-Yuan
>
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