[phenixbb] Bug in phenix.carbo_load in latest nightlies
Roger Dodd
roger.dodd at gmail.com
Tue Jan 20 03:58:26 PST 2015
Hi all,
I've been using the carbo_load tool to add in GlcNAc residues to Asn side
chains and have noticed that in recent nightlies there is a bug that throws
up the following error message (this occurs even if carbo_load is just run
in "mode 1"):
Traceback (most recent call last):
File
"/Applications/phenix-dev-1924/build/../modules/elbow/elbow/command_line/carbo_load.py",
line 705, in <module>
run(args)
File
"/Applications/phenix-dev-1924/build/../modules/elbow/elbow/command_line/carbo_load.py",
line 417, in run
from elbow.saccharide import carbohydrate_classes
File
"/Applications/phenix-dev-1924/modules/elbow/elbow/saccharide/carbohydrate_classes.py",
line 28, in <module>
from phenix.ligands.DensityBlobsClassConnectivity import
DensityBlobsClassConnectivity
ImportError: No module named DensityBlobsClassConnectivity
I get this with dev-1894 and dev-1924 but not the last stable 1.9-1692.
Cheers,
Roger
--
Roger B. Dodd, PhD
Cambridge Institute for Medical Research
University of Cambridge School of Clinical Medicine
Wellcome Trust/MRC Building
Cambridge Biomedical Campus
Hills Road
Cambridge
CB2 0XY
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