[phenixbb] input for specifying labin in phenix.find_ncs

Gabor Bunkoczi gb360 at cam.ac.uk
Tue Nov 25 03:13:18 PST 2014


Hi Arko,

the following works for me:
phenix.find_ncs yy.mtz labin="FP=F PHIB=PHI FOM=FOM"

I am not sure that find_ncs will use multiple sources of information, 
i.e. it will either use the PDB file (either heavy atom positions or MR 
structure), or the MTZ-file (using density). I do not know what happens 
if you specify both.

BW, Gabor

On 2014-11-25 10:29, Arka Chakraborty wrote:
> Dear Phenix BBers,
> 
> I have a seemingly trivial problem in specifying column labels in
> phenix.find_ncs. Following the manual, on entering labels as :
> phenix.find_ncs xx.pdb yy.mtz params.ncs.labin = "labin FP=F PHIB=PHI
> FOM=FOM"
> , phenix returns the error :  'Sorry, cannot interpret the keyword:
> params.ncs.labin=labin FP=F PHIB=PHI FOM=FOM'. Any clues on what
> mistake I might be making will be greatly appreciated.
> 
> Thanks a lot,
> 
> Regards,
> 
> Arko
> 
> --
> 
> ARKA CHAKRABORTY
> IBMB (INSTITUT DE BIOLOGIA MOLECULAR DE BARCELONA)
> BARCELONA, SPAIN
> 
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