[phenixbb] molprobity coot TODO python script
nechols at lbl.gov
Thu Jun 19 13:42:14 PDT 2014
On Thu, Jun 19, 2014 at 12:50 PM, wtempel <wtempel at gmail.com> wrote:
> I noticed the following when loading a phenix-created python TODO script
> using the 4730 and 5100 Linux-x86_64-ubuntu-12.04.3-python-gtk2 coot builds.
> A "MolProbity to-do list" window opens. GUI functions such as "Show Probe
> dots" and "Overlap only" are working as expected. Clicking anywhere within
> the "C-beta outliers" or "Severe clashes" areas of the window moves the
> display center to problem areas of the structure.
> no text is visible in any of the columns ("Chain", "Residue", "Name", etc.
> of the "C-beta outliers area"; "Atom 1", Atom 2", "Overlap" of the "Severe
> clashes"). As a result, I cannot select a specific problem spot for
> Any ideas?
That's strange - it's working fine for me, but I'm using the latest code.
Which version are you using? Could you please send me the script?
Another molprobity related question: us there a phenix script that produces
> a list of NQH flip candidates?
The version in the nightly build will output these, but they don't make it
into the to-do list yet. (They have always appeared in the Phenix GUI,
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