[phenixbb] Prime and switch crashing

[Oliver Clarke]

Never mind, it works using autobuild (phenix.autobuild data=data.mtz solvent_fraction=0.58 model=model_rs6_refine_001.pdb ps_in_rebuild=true maps_only=true) so this doesn’t really matter.

Best,
Oliver.
On Jun 13, 2014, at 7:42 AM, Oliver Clarke <olibclarke at gmail.com> wrote:

> Hi all,
> 
> I’m getting an error running phenix.prime_and_switch_map that I can’t figure out. It crashes shortly after F(model) initialization. The last part of the log and traceback is appended below - if anyone can figure out what I’m doing wrong I’d be very grateful! 
> 
> I’m running dev-1702 on a Mac (not sure whether this is a mac specific issue though). This happens with multiple different pdb/mtz combinations, so I don’t think it is something specific to my files. 
> 
> Best,
> Oliver.
> 
> Command: phenix.prime_and_switch_map model_rs6_refine_001.pdb model_rs6_refine_001.mtz debug=true
> 
> Error:
>                  ----------F(model) initialization----------
> 
> Twinning will be detected automatically.
> |--(resolution: 3.00 - 71.59 A, n_refl.=26875 (all), 5.48  % free)------------|
> |                                                                             |
> | r_work= 0.2683 r_free= 0.3402 coordinate error (max.-lik. estimate): 0.58 A |
> |                                                                             |
> | x-ray target function (ml) for work reflections: 5.858242                   |
> |-----------------------------------------------------------------------------|
> 
> End of input processing
> Traceback (most recent call last):
>  File "/Applications/PHENIX-dev-1702/Contents/phenix-dev-1702/build/mac-intel-osx-x86_64/../../phenix/phenix/command_line/prime_and_switch_map.py", line 160, in <module>
>    run(sys.argv[1:])
>  File "/Applications/PHENIX-dev-1702/Contents/phenix-dev-1702/build/mac-intel-osx-x86_64/../../phenix/phenix/command_line/prime_and_switch_map.py", line 68, in run
>    map_coeffs = fmodel.electron_density_map().map_coefficients(
> TypeError: electron_density_map() takes exactly 2 arguments (1 given)